Cluster: HRGMv2_3092_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3092
- CGC Family ID: CGCFAM_05231
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3092_6 | HRGMv2_3092_6_25 | 26207 | 27937 | - | CBM50 |
| pfam | HRGMv2_3092_6 | HRGMv2_3092_6_26 | 28180 | 29154 | + | PTA_PTB |
| pfam | HRGMv2_3092_6 | HRGMv2_3092_6_27 | 29451 | 30533 | + | Gp_dh_N | Gp_dh_C |
| TC | HRGMv2_3092_6 | HRGMv2_3092_6_28 | 30577 | 31719 | - | 3.A.24.1.1 |
| TC | HRGMv2_3092_6 | HRGMv2_3092_6_29 | 31721 | 32251 | - | 2.A.87.3.2 |
Gene ID: HRGMv2_3092_6_25
Type: CAZyme
Location: 26207 - 27937 (-)
Type: CAZyme
Location: 26207 - 27937 (-)
Gene ID: HRGMv2_3092_6_26
Type: pfam
Location: 28180 - 29154 (+)
Type: pfam
Location: 28180 - 29154 (+)
Gene ID: HRGMv2_3092_6_27
Type: pfam
Location: 29451 - 30533 (+)
Type: pfam
Location: 29451 - 30533 (+)
Gene ID: HRGMv2_3092_6_28
Type: TC
Location: 30577 - 31719 (-)
Type: TC
Location: 30577 - 31719 (-)
Gene ID: HRGMv2_3092_6_29
Type: TC
Location: 31721 - 32251 (-)
Type: TC
Location: 31721 - 32251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Hominicoprocola
Species
Hominicoprocola sp900768135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3092_6_25 | vegetarian > vegan | 1.01721 | 0.00012 |
| HRGMv2_3092_6_29 | vegetarian > vegan | 1.23055 | 0.00012 |