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Cluster: HRGMv2_3092_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3092_4 HRGMv2_3092_4_46 59532 60227 + 3.A.1.132.6
NULL(UNKNOWN) HRGMv2_3092_4 HRGMv2_3092_4_47 60221 61039 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3092_4 HRGMv2_3092_4_48 61199 61963 + 3.A.1.134.4
TC HRGMv2_3092_4 HRGMv2_3092_4_49 61960 63387 + 3.A.1.134.9
NULL(UNKNOWN) HRGMv2_3092_4 HRGMv2_3092_4_50 63682 65502 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3092_4 HRGMv2_3092_4_51 65856 67208 + ELFV_dehydrog | ELFV_dehydrog_N
TC HRGMv2_3092_4 HRGMv2_3092_4_52 67328 68743 - 9.A.11.1.1
pfam HRGMv2_3092_4 HRGMv2_3092_4_53 69058 70458 - Acetyltransf_1 | LPG_synthase_C | Acetyltransf_3
TF HRGMv2_3092_4 HRGMv2_3092_4_54 70550 71434 - HTH_1
TC HRGMv2_3092_4 HRGMv2_3092_4_55 71617 73092 + 2.A.22.5.3
CAZyme HRGMv2_3092_4 HRGMv2_3092_4_56 73184 73903 + CE4
Gene ID: HRGMv2_3092_4_46
Type: TC
Location: 59532 - 60227 (+)
Gene ID: HRGMv2_3092_4_47
Type:
Location: 60221 - 61039 (+)
Gene ID: HRGMv2_3092_4_48
Type: TC
Location: 61199 - 61963 (+)
Gene ID: HRGMv2_3092_4_49
Type: TC
Location: 61960 - 63387 (+)
Gene ID: HRGMv2_3092_4_50
Type:
Location: 63682 - 65502 (+)
Gene ID: HRGMv2_3092_4_51
Type: pfam
Location: 65856 - 67208 (+)
Gene ID: HRGMv2_3092_4_52
Type: TC
Location: 67328 - 68743 (-)
Gene ID: HRGMv2_3092_4_53
Type: pfam
Location: 69058 - 70458 (-)
Gene ID: HRGMv2_3092_4_54
Type: TF
Location: 70550 - 71434 (-)
Gene ID: HRGMv2_3092_4_55
Type: TC
Location: 71617 - 73092 (+)
Gene ID: HRGMv2_3092_4_56
Type: CAZyme
Location: 73184 - 73903 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3092_4_47 vegetarian > vegan 1.31325 0.00012
HRGMv2_3092_4_49 vegetarian > vegan 1.12611 0.00012
HRGMv2_3092_4_54 vegetarian > vegan 1.73533 0.00012

🧭 Explore Read Mapping of CGC

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