Cluster: HRGMv2_3092_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3092
- CGC Family ID: CGCFAM_02095
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3092_33 | HRGMv2_3092_33_3 | 1965 | 3509 | + | 3.A.1.2.17 |
| pfam | HRGMv2_3092_33 | HRGMv2_3092_33_4 | 3502 | 4611 | + | BPD_transp_2 |
| TC | HRGMv2_3092_33 | HRGMv2_3092_33_5 | 4611 | 5603 | + | 3.A.1.2.12 |
| peptidase | HRGMv2_3092_33 | HRGMv2_3092_33_6 | 5658 | 7016 | + | M38.UNW |
| NULL(UNKNOWN) | HRGMv2_3092_33 | HRGMv2_3092_33_7 | 7023 | 7304 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3092_33 | HRGMv2_3092_33_8 | 7352 | 8761 | - | GT4 |
Gene ID: HRGMv2_3092_33_3
Type: TC
Location: 1965 - 3509 (+)
Type: TC
Location: 1965 - 3509 (+)
Gene ID: HRGMv2_3092_33_4
Type: pfam
Location: 3502 - 4611 (+)
Type: pfam
Location: 3502 - 4611 (+)
Gene ID: HRGMv2_3092_33_5
Type: TC
Location: 4611 - 5603 (+)
Type: TC
Location: 4611 - 5603 (+)
Gene ID: HRGMv2_3092_33_6
Type: peptidase
Location: 5658 - 7016 (+)
Type: peptidase
Location: 5658 - 7016 (+)
Gene ID: HRGMv2_3092_33_7
Type:
Location: 7023 - 7304 (+)
Type:
Location: 7023 - 7304 (+)
Gene ID: HRGMv2_3092_33_8
Type: CAZyme
Location: 7352 - 8761 (-)
Type: CAZyme
Location: 7352 - 8761 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Hominicoprocola
Species
Hominicoprocola sp900768135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3092_33_8 | vegetarian > vegan | 1.09185 | 0.00012 |