Cluster: HRGMv2_3081_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3081
- CGC Family ID: CGCFAM_00771
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3081_73 | HRGMv2_3081_73_4 | 2809 | 3678 | - | 3.A.1.1.29 |
| TC | HRGMv2_3081_73 | HRGMv2_3081_73_5 | 3682 | 4620 | - | 3.A.1.1.11 |
| STP | HRGMv2_3081_73 | HRGMv2_3081_73_6 | 4658 | 7519 | - | SBP_bac_1 |
| CAZyme | HRGMv2_3081_73 | HRGMv2_3081_73_7 | 7807 | 8631 | - | GH1 |
Gene ID: HRGMv2_3081_73_4
Type: TC
Location: 2809 - 3678 (-)
Type: TC
Location: 2809 - 3678 (-)
Gene ID: HRGMv2_3081_73_5
Type: TC
Location: 3682 - 4620 (-)
Type: TC
Location: 3682 - 4620 (-)
Gene ID: HRGMv2_3081_73_6
Type: STP
Location: 4658 - 7519 (-)
Type: STP
Location: 4658 - 7519 (-)
Gene ID: HRGMv2_3081_73_7
Type: CAZyme
Location: 7807 - 8631 (-)
Type: CAZyme
Location: 7807 - 8631 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp900768125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3081_73_4 | vegetarian > vegan | 2.74344 | 0.00969 |
| HRGMv2_3081_73_5 | vegetarian > vegan | 1.71502 | 0.00969 |
| HRGMv2_3081_73_6 | vegetarian > vegan | 1.30731 | 0.00969 |
| HRGMv2_3081_73_7 | vegetarian > vegan | 1.94636 | 0.00969 |