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Cluster: HRGMv2_3081_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3081_28 HRGMv2_3081_28_16 11937 13451 + GH77
CAZyme HRGMv2_3081_28 HRGMv2_3081_28_17 13637 16006 + GT35
TC HRGMv2_3081_28 HRGMv2_3081_28_18 16330 17628 + 3.A.1.1.27
TC HRGMv2_3081_28 HRGMv2_3081_28_19 17857 19350 + 3.A.1.1.27
TC HRGMv2_3081_28 HRGMv2_3081_28_20 19350 20225 + 3.A.1.1.27
TF HRGMv2_3081_28 HRGMv2_3081_28_21 20237 21265 + LacI
CAZyme HRGMv2_3081_28 HRGMv2_3081_28_22 21265 22914 + GH13_36
CAZyme HRGMv2_3081_28 HRGMv2_3081_28_23 22933 24819 + GH13_14
Gene ID: HRGMv2_3081_28_16
Type: CAZyme
Location: 11937 - 13451 (+)
Gene ID: HRGMv2_3081_28_17
Type: CAZyme
Location: 13637 - 16006 (+)
Gene ID: HRGMv2_3081_28_18
Type: TC
Location: 16330 - 17628 (+)
Gene ID: HRGMv2_3081_28_19
Type: TC
Location: 17857 - 19350 (+)
Gene ID: HRGMv2_3081_28_20
Type: TC
Location: 19350 - 20225 (+)
Gene ID: HRGMv2_3081_28_21
Type: TF
Location: 20237 - 21265 (+)
Gene ID: HRGMv2_3081_28_22
Type: CAZyme
Location: 21265 - 22914 (+)
Gene ID: HRGMv2_3081_28_23
Type: CAZyme
Location: 22933 - 24819 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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