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Cluster: HRGMv2_3066_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3066_1 HRGMv2_3066_1_395 417122 418981 - 3.A.1.135.5
TC HRGMv2_3066_1 HRGMv2_3066_1_396 418981 420711 - 3.A.1.135.5
CAZyme HRGMv2_3066_1 HRGMv2_3066_1_397 420893 423589 - GH3
TC HRGMv2_3066_1 HRGMv2_3066_1_398 423617 424573 - 3.A.1.2.18
TC HRGMv2_3066_1 HRGMv2_3066_1_399 424578 425696 - 3.A.1.2.17
TC HRGMv2_3066_1 HRGMv2_3066_1_400 425689 427239 - 3.A.1.2.17
TC HRGMv2_3066_1 HRGMv2_3066_1_401 427408 428520 - 3.A.1.2.17
TF HRGMv2_3066_1 HRGMv2_3066_1_402 428815 429843 + LacI
pfam HRGMv2_3066_1 HRGMv2_3066_1_403 429977 430495 - Ureidogly_lyase
TC HRGMv2_3066_1 HRGMv2_3066_1_404 430485 431390 - 3.A.1.2.17
pfam HRGMv2_3066_1 HRGMv2_3066_1_405 431392 432486 - BPD_transp_2
TC HRGMv2_3066_1 HRGMv2_3066_1_406 432476 434002 - 3.A.1.2.12
Gene ID: HRGMv2_3066_1_395
Type: TC
Location: 417122 - 418981 (-)
Gene ID: HRGMv2_3066_1_396
Type: TC
Location: 418981 - 420711 (-)
Gene ID: HRGMv2_3066_1_397
Type: CAZyme
Location: 420893 - 423589 (-)
Gene ID: HRGMv2_3066_1_398
Type: TC
Location: 423617 - 424573 (-)
Gene ID: HRGMv2_3066_1_399
Type: TC
Location: 424578 - 425696 (-)
Gene ID: HRGMv2_3066_1_400
Type: TC
Location: 425689 - 427239 (-)
Gene ID: HRGMv2_3066_1_401
Type: TC
Location: 427408 - 428520 (-)
Gene ID: HRGMv2_3066_1_402
Type: TF
Location: 428815 - 429843 (+)
Gene ID: HRGMv2_3066_1_403
Type: pfam
Location: 429977 - 430495 (-)
Gene ID: HRGMv2_3066_1_404
Type: TC
Location: 430485 - 431390 (-)
Gene ID: HRGMv2_3066_1_405
Type: pfam
Location: 431392 - 432486 (-)
Gene ID: HRGMv2_3066_1_406
Type: TC
Location: 432476 - 434002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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