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Cluster: HRGMv2_3066_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3066_12 HRGMv2_3066_12_36 40153 40881 - 3.A.1.3.25
TC HRGMv2_3066_12 HRGMv2_3066_12_37 40862 41530 - 3.A.1.3.25
TC HRGMv2_3066_12 HRGMv2_3066_12_38 41654 42469 - 3.A.1.3.25
CAZyme HRGMv2_3066_12 HRGMv2_3066_12_39 42722 44587 - GH3
TC HRGMv2_3066_12 HRGMv2_3066_12_40 45022 46347 + 3.A.1.4.10
TC HRGMv2_3066_12 HRGMv2_3066_12_41 46509 47417 + 3.A.1.4.10
TC HRGMv2_3066_12 HRGMv2_3066_12_42 47427 48470 + 3.A.1.4.8
TC HRGMv2_3066_12 HRGMv2_3066_12_43 48467 49231 + 3.A.1.4.10
TC HRGMv2_3066_12 HRGMv2_3066_12_44 49243 49947 + 3.A.1.4.10
pfam HRGMv2_3066_12 HRGMv2_3066_12_45 50013 50492 + tRNA_edit
CAZyme HRGMv2_3066_12 HRGMv2_3066_12_46 50539 52191 - GH13_20
pfam HRGMv2_3066_12 HRGMv2_3066_12_47 52464 53003 - Rubrerythrin | RUBY_RBDX
TF HRGMv2_3066_12 HRGMv2_3066_12_48 53034 53423 - FUR
TC HRGMv2_3066_12 HRGMv2_3066_12_49 53553 54242 - 3.A.2.2.2
TC HRGMv2_3066_12 HRGMv2_3066_12_50 54249 55625 - 3.A.2.2.2
TC HRGMv2_3066_12 HRGMv2_3066_12_51 55625 57397 - 3.A.2.2.2
Gene ID: HRGMv2_3066_12_36
Type: TC
Location: 40153 - 40881 (-)
Gene ID: HRGMv2_3066_12_37
Type: TC
Location: 40862 - 41530 (-)
Gene ID: HRGMv2_3066_12_38
Type: TC
Location: 41654 - 42469 (-)
Gene ID: HRGMv2_3066_12_39
Type: CAZyme
Location: 42722 - 44587 (-)
Gene ID: HRGMv2_3066_12_40
Type: TC
Location: 45022 - 46347 (+)
Gene ID: HRGMv2_3066_12_41
Type: TC
Location: 46509 - 47417 (+)
Gene ID: HRGMv2_3066_12_42
Type: TC
Location: 47427 - 48470 (+)
Gene ID: HRGMv2_3066_12_43
Type: TC
Location: 48467 - 49231 (+)
Gene ID: HRGMv2_3066_12_44
Type: TC
Location: 49243 - 49947 (+)
Gene ID: HRGMv2_3066_12_45
Type: pfam
Location: 50013 - 50492 (+)
Gene ID: HRGMv2_3066_12_46
Type: CAZyme
Location: 50539 - 52191 (-)
Gene ID: HRGMv2_3066_12_47
Type: pfam
Location: 52464 - 53003 (-)
Gene ID: HRGMv2_3066_12_48
Type: TF
Location: 53034 - 53423 (-)
Gene ID: HRGMv2_3066_12_49
Type: TC
Location: 53553 - 54242 (-)
Gene ID: HRGMv2_3066_12_50
Type: TC
Location: 54249 - 55625 (-)
Gene ID: HRGMv2_3066_12_51
Type: TC
Location: 55625 - 57397 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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