Cluster: HRGMv2_3047_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3047
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3047_11 | HRGMv2_3047_11_27 | 19754 | 22255 | - | GH78 |
| pfam | HRGMv2_3047_11 | HRGMv2_3047_11_28 | 22457 | 24073 | + | Carb_kinase | YjeF_N | YjeF_N |
| TC | HRGMv2_3047_11 | HRGMv2_3047_11_29 | 24245 | 26950 | + | 3.A.1.135.5 |
| pfam | HRGMv2_3047_11 | HRGMv2_3047_11_30 | 26976 | 27782 | + | DUF1854 |
| TC | HRGMv2_3047_11 | HRGMv2_3047_11_31 | 27819 | 30038 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_3047_11_27
Type: CAZyme
Location: 19754 - 22255 (-)
Type: CAZyme
Location: 19754 - 22255 (-)
Gene ID: HRGMv2_3047_11_28
Type: pfam
Location: 22457 - 24073 (+)
Type: pfam
Location: 22457 - 24073 (+)
Gene ID: HRGMv2_3047_11_29
Type: TC
Location: 24245 - 26950 (+)
Type: TC
Location: 24245 - 26950 (+)
Gene ID: HRGMv2_3047_11_30
Type: pfam
Location: 26976 - 27782 (+)
Type: pfam
Location: 26976 - 27782 (+)
Gene ID: HRGMv2_3047_11_31
Type: TC
Location: 27819 - 30038 (+)
Type: TC
Location: 27819 - 30038 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
RGIG3947
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.