Cluster: HRGMv2_3047_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3047
- CGC Family ID: CGCFAM_00089
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3047_3 | HRGMv2_3047_3_21 | 26345 | 29446 | - | GH2 |
| pfam | HRGMv2_3047_3 | HRGMv2_3047_3_22 | 29739 | 30503 | + | PseudoU_synth_2 | S4 |
| pfam | HRGMv2_3047_3 | HRGMv2_3047_3_23 | 30591 | 32762 | + | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5 |
| TC | HRGMv2_3047_3 | HRGMv2_3047_3_24 | 32973 | 34082 | + | 3.A.1.1.24 |
| peptidase | HRGMv2_3047_3 | HRGMv2_3047_3_25 | 34293 | 35294 | + | G05.UPW |
| pfam | HRGMv2_3047_3 | HRGMv2_3047_3_26 | 35314 | 35748 | + | dCMP_cyt_deam_1 | MafB19-deam |
| TC | HRGMv2_3047_3 | HRGMv2_3047_3_27 | 35762 | 36412 | + | 9.B.114.1.1 |
Gene ID: HRGMv2_3047_3_21
Type: CAZyme
Location: 26345 - 29446 (-)
Type: CAZyme
Location: 26345 - 29446 (-)
Gene ID: HRGMv2_3047_3_22
Type: pfam
Location: 29739 - 30503 (+)
Type: pfam
Location: 29739 - 30503 (+)
Gene ID: HRGMv2_3047_3_23
Type: pfam
Location: 30591 - 32762 (+)
Type: pfam
Location: 30591 - 32762 (+)
Gene ID: HRGMv2_3047_3_24
Type: TC
Location: 32973 - 34082 (+)
Type: TC
Location: 32973 - 34082 (+)
Gene ID: HRGMv2_3047_3_25
Type: peptidase
Location: 34293 - 35294 (+)
Type: peptidase
Location: 34293 - 35294 (+)
Gene ID: HRGMv2_3047_3_26
Type: pfam
Location: 35314 - 35748 (+)
Type: pfam
Location: 35314 - 35748 (+)
Gene ID: HRGMv2_3047_3_27
Type: TC
Location: 35762 - 36412 (+)
Type: TC
Location: 35762 - 36412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
RGIG3947
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.