Cluster: HRGMv2_3046_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3046
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_9 | 6691 | 7548 | - | 2.A.115.1.5 |
| CAZyme | HRGMv2_3046_28 | HRGMv2_3046_28_10 | 7541 | 8968 | - | GH1 |
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_11 | 9025 | 10623 | - | 4.A.1.2.11 |
| pfam | HRGMv2_3046_28 | HRGMv2_3046_28_12 | 10818 | 11645 | - | PRD | PRD | CAT_RBD |
| pfam | HRGMv2_3046_28 | HRGMv2_3046_28_13 | 12098 | 13021 | - | Mem_trans | Mem_trans |
| CAZyme | HRGMv2_3046_28 | HRGMv2_3046_28_14 | 13134 | 14561 | - | GH1 |
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_15 | 14578 | 15870 | - | 4.A.3.2.9 |
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_16 | 15906 | 16211 | - | 4.A.3.2.2 |
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_17 | 16241 | 16558 | - | 4.A.3.2.4 |
| TF | HRGMv2_3046_28 | HRGMv2_3046_28_18 | 16551 | 18449 | - | HTH_11 | Mga |
| TC | HRGMv2_3046_28 | HRGMv2_3046_28_19 | 18690 | 20015 | - | 4.A.2.1.17 |
Gene ID: HRGMv2_3046_28_9
Type: TC
Location: 6691 - 7548 (-)
Type: TC
Location: 6691 - 7548 (-)
Gene ID: HRGMv2_3046_28_10
Type: CAZyme
Location: 7541 - 8968 (-)
Type: CAZyme
Location: 7541 - 8968 (-)
Gene ID: HRGMv2_3046_28_11
Type: TC
Location: 9025 - 10623 (-)
Type: TC
Location: 9025 - 10623 (-)
Gene ID: HRGMv2_3046_28_12
Type: pfam
Location: 10818 - 11645 (-)
Type: pfam
Location: 10818 - 11645 (-)
Gene ID: HRGMv2_3046_28_13
Type: pfam
Location: 12098 - 13021 (-)
Type: pfam
Location: 12098 - 13021 (-)
Gene ID: HRGMv2_3046_28_14
Type: CAZyme
Location: 13134 - 14561 (-)
Type: CAZyme
Location: 13134 - 14561 (-)
Gene ID: HRGMv2_3046_28_15
Type: TC
Location: 14578 - 15870 (-)
Type: TC
Location: 14578 - 15870 (-)
Gene ID: HRGMv2_3046_28_16
Type: TC
Location: 15906 - 16211 (-)
Type: TC
Location: 15906 - 16211 (-)
Gene ID: HRGMv2_3046_28_17
Type: TC
Location: 16241 - 16558 (-)
Type: TC
Location: 16241 - 16558 (-)
Gene ID: HRGMv2_3046_28_18
Type: TF
Location: 16551 - 18449 (-)
Type: TF
Location: 16551 - 18449 (-)
Gene ID: HRGMv2_3046_28_19
Type: TC
Location: 18690 - 20015 (-)
Type: TC
Location: 18690 - 20015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Angelakisella
Species
Angelakisella sp900552845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3046_28_9 | vegetarian > omnivore | 1.51206 | 0.01681 |
| HRGMv2_3046_28_9 | vegetarian > vegan | 2.07096 | 0.00454 |
| HRGMv2_3046_28_10 | vegetarian > omnivore | 1.10207 | 0.01681 |
| HRGMv2_3046_28_10 | vegetarian > vegan | 1.94421 | 0.00454 |
| HRGMv2_3046_28_11 | vegetarian > omnivore | 1.04203 | 0.01681 |
| HRGMv2_3046_28_11 | vegetarian > vegan | 1.74735 | 0.00454 |
| HRGMv2_3046_28_12 | vegetarian > omnivore | 1.26597 | 0.01681 |
| HRGMv2_3046_28_12 | vegetarian > vegan | 1.64027 | 0.00454 |