Cluster: HRGMv2_3037_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3037
- CGC Family ID: CGCFAM_00233
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3037_40 | HRGMv2_3037_40_1 | 604 | 3663 | - | GH3 |
| CAZyme | HRGMv2_3037_40 | HRGMv2_3037_40_2 | 3742 | 6255 | - | GH3 |
| TF | HRGMv2_3037_40 | HRGMv2_3037_40_3 | 6474 | 7196 | - | LytTR |
| pfam | HRGMv2_3037_40 | HRGMv2_3037_40_4 | 7193 | 8545 | - | HATPase_c_5 |
| TC | HRGMv2_3037_40 | HRGMv2_3037_40_5 | 8796 | 10277 | + | 4.C.1.1.7 |
Gene ID: HRGMv2_3037_40_1
Type: CAZyme
Location: 604 - 3663 (-)
Type: CAZyme
Location: 604 - 3663 (-)
Gene ID: HRGMv2_3037_40_2
Type: CAZyme
Location: 3742 - 6255 (-)
Type: CAZyme
Location: 3742 - 6255 (-)
Gene ID: HRGMv2_3037_40_3
Type: TF
Location: 6474 - 7196 (-)
Type: TF
Location: 6474 - 7196 (-)
Gene ID: HRGMv2_3037_40_4
Type: pfam
Location: 7193 - 8545 (-)
Type: pfam
Location: 7193 - 8545 (-)
Gene ID: HRGMv2_3037_40_5
Type: TC
Location: 8796 - 10277 (+)
Type: TC
Location: 8796 - 10277 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.