Cluster: HRGMv2_3037_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3037
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3037_17 | HRGMv2_3037_17_21 | 19870 | 20409 | - | 3.A.1.25.5 |
| TF | HRGMv2_3037_17 | HRGMv2_3037_17_22 | 20551 | 21576 | + | HTH_11 |
| CAZyme | HRGMv2_3037_17 | HRGMv2_3037_17_23 | 21630 | 24344 | - | GH3 |
| TF | HRGMv2_3037_17 | HRGMv2_3037_17_24 | 24527 | 25306 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_3037_17 | HRGMv2_3037_17_25 | 25373 | 27841 | - | 3.A.3.23.2 |
Gene ID: HRGMv2_3037_17_21
Type: TC
Location: 19870 - 20409 (-)
Type: TC
Location: 19870 - 20409 (-)
Gene ID: HRGMv2_3037_17_22
Type: TF
Location: 20551 - 21576 (+)
Type: TF
Location: 20551 - 21576 (+)
Gene ID: HRGMv2_3037_17_23
Type: CAZyme
Location: 21630 - 24344 (-)
Type: CAZyme
Location: 21630 - 24344 (-)
Gene ID: HRGMv2_3037_17_24
Type: TF
Location: 24527 - 25306 (+)
Type: TF
Location: 24527 - 25306 (+)
Gene ID: HRGMv2_3037_17_25
Type: TC
Location: 25373 - 27841 (-)
Type: TC
Location: 25373 - 27841 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.