Cluster: HRGMv2_3037_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3037
- CGC Family ID: CGCFAM_02906
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3037_9 | HRGMv2_3037_9_83 | 108941 | 110074 | + | 9.B.97.1.2 |
| TF | HRGMv2_3037_9 | HRGMv2_3037_9_84 | 110124 | 111149 | - | LacI |
| NULL(UNKNOWN) | HRGMv2_3037_9 | HRGMv2_3037_9_85 | 111174 | 111752 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3037_9 | HRGMv2_3037_9_86 | 111754 | 114204 | - | GH3 |
| CAZyme | HRGMv2_3037_9 | HRGMv2_3037_9_87 | 114429 | 118499 | - | GH3 |
Gene ID: HRGMv2_3037_9_83
Type: TC
Location: 108941 - 110074 (+)
Type: TC
Location: 108941 - 110074 (+)
Gene ID: HRGMv2_3037_9_84
Type: TF
Location: 110124 - 111149 (-)
Type: TF
Location: 110124 - 111149 (-)
Gene ID: HRGMv2_3037_9_85
Type:
Location: 111174 - 111752 (-)
Type:
Location: 111174 - 111752 (-)
Gene ID: HRGMv2_3037_9_86
Type: CAZyme
Location: 111754 - 114204 (-)
Type: CAZyme
Location: 111754 - 114204 (-)
Gene ID: HRGMv2_3037_9_87
Type: CAZyme
Location: 114429 - 118499 (-)
Type: CAZyme
Location: 114429 - 118499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.