Cluster: HRGMv2_3037_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3037
- CGC Family ID: CGCFAM_04617
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3037_9 | HRGMv2_3037_9_57 | 77575 | 78678 | + | GT4 |
| pfam | HRGMv2_3037_9 | HRGMv2_3037_9_58 | 78727 | 80301 | + | Wzy_C |
| pfam | HRGMv2_3037_9 | HRGMv2_3037_9_59 | 80508 | 81641 | + | Phage_integrase | Phage_int_SAM_5 | Phage_int_SAM_3 |
| TC | HRGMv2_3037_9 | HRGMv2_3037_9_60 | 81687 | 84233 | - | 3.A.3.5.15 |
| pfam | HRGMv2_3037_9 | HRGMv2_3037_9_61 | 84280 | 84543 | - | Trns_repr_metal |
| CAZyme | HRGMv2_3037_9 | HRGMv2_3037_9_62 | 84724 | 86007 | - | GT2 |
Gene ID: HRGMv2_3037_9_57
Type: CAZyme
Location: 77575 - 78678 (+)
Type: CAZyme
Location: 77575 - 78678 (+)
Gene ID: HRGMv2_3037_9_58
Type: pfam
Location: 78727 - 80301 (+)
Type: pfam
Location: 78727 - 80301 (+)
Gene ID: HRGMv2_3037_9_59
Type: pfam
Location: 80508 - 81641 (+)
Type: pfam
Location: 80508 - 81641 (+)
Gene ID: HRGMv2_3037_9_60
Type: TC
Location: 81687 - 84233 (-)
Type: TC
Location: 81687 - 84233 (-)
Gene ID: HRGMv2_3037_9_61
Type: pfam
Location: 84280 - 84543 (-)
Type: pfam
Location: 84280 - 84543 (-)
Gene ID: HRGMv2_3037_9_62
Type: CAZyme
Location: 84724 - 86007 (-)
Type: CAZyme
Location: 84724 - 86007 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.