Cluster: HRGMv2_3030_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3030
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3030_8 | HRGMv2_3030_8_9 | 8349 | 9575 | + | GT4 |
| STP | HRGMv2_3030_8 | HRGMv2_3030_8_10 | 9589 | 11358 | + | cNMP_binding |
| pfam | HRGMv2_3030_8 | HRGMv2_3030_8_11 | 12751 | 13671 | + | Phage_integrase |
| TC | HRGMv2_3030_8 | HRGMv2_3030_8_12 | 14264 | 15133 | - | 2.A.115.1.2 |
| TC | HRGMv2_3030_8 | HRGMv2_3030_8_13 | 15296 | 16894 | - | 3.A.1.147.6 |
| TC | HRGMv2_3030_8 | HRGMv2_3030_8_14 | 16888 | 17601 | - | 3.A.1.147.6 |
Gene ID: HRGMv2_3030_8_9
Type: CAZyme
Location: 8349 - 9575 (+)
Type: CAZyme
Location: 8349 - 9575 (+)
Gene ID: HRGMv2_3030_8_10
Type: STP
Location: 9589 - 11358 (+)
Type: STP
Location: 9589 - 11358 (+)
Gene ID: HRGMv2_3030_8_11
Type: pfam
Location: 12751 - 13671 (+)
Type: pfam
Location: 12751 - 13671 (+)
Gene ID: HRGMv2_3030_8_12
Type: TC
Location: 14264 - 15133 (-)
Type: TC
Location: 14264 - 15133 (-)
Gene ID: HRGMv2_3030_8_13
Type: TC
Location: 15296 - 16894 (-)
Type: TC
Location: 15296 - 16894 (-)
Gene ID: HRGMv2_3030_8_14
Type: TC
Location: 16888 - 17601 (-)
Type: TC
Location: 16888 - 17601 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900757415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3030_8_10 | vegetarian > omnivore | 1.28549 | 0.02609 |
| HRGMv2_3030_8_12 | vegetarian > omnivore | 4.55681 | 0.02609 |