Cluster: HRGMv2_3030_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3030
- CGC Family ID: CGCFAM_01051
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3030_11 | HRGMv2_3030_11_11 | 8804 | 10306 | - | 2.A.80.1.1 |
| pfam | HRGMv2_3030_11 | HRGMv2_3030_11_12 | 10440 | 11432 | - | TctC |
| pfam | HRGMv2_3030_11 | HRGMv2_3030_11_13 | 11503 | 11991 | - | TctB |
| CAZyme | HRGMv2_3030_11 | HRGMv2_3030_11_14 | 12002 | 12829 | - | CE4 |
Gene ID: HRGMv2_3030_11_11
Type: TC
Location: 8804 - 10306 (-)
Type: TC
Location: 8804 - 10306 (-)
Gene ID: HRGMv2_3030_11_12
Type: pfam
Location: 10440 - 11432 (-)
Type: pfam
Location: 10440 - 11432 (-)
Gene ID: HRGMv2_3030_11_13
Type: pfam
Location: 11503 - 11991 (-)
Type: pfam
Location: 11503 - 11991 (-)
Gene ID: HRGMv2_3030_11_14
Type: CAZyme
Location: 12002 - 12829 (-)
Type: CAZyme
Location: 12002 - 12829 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900757415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3030_11_11 | vegetarian > vegan | 5.60045 | 0.00364 |
| HRGMv2_3030_11_12 | vegetarian > vegan | 5.75552 | 0.00364 |
| HRGMv2_3030_11_13 | vegetarian > omnivore | 2.21683 | 0.02717 |
| HRGMv2_3030_11_13 | vegetarian > vegan | 4.79173 | 0.00364 |
| HRGMv2_3030_11_14 | vegetarian > omnivore | 2.53700 | 0.02717 |
| HRGMv2_3030_11_14 | vegetarian > vegan | 5.64285 | 0.00364 |