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Cluster: HRGMv2_3029_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3029_10 HRGMv2_3029_10_39 43756 45882 - GH42
STP HRGMv2_3029_10 HRGMv2_3029_10_40 46156 47049 + PfkB
pfam HRGMv2_3029_10 HRGMv2_3029_10_41 47614 48273 - YhhN
TC HRGMv2_3029_10 HRGMv2_3029_10_42 48391 51753 - 3.A.1.137.2
TC HRGMv2_3029_10 HRGMv2_3029_10_43 51756 52457 - 3.A.1.122.7
pfam HRGMv2_3029_10 HRGMv2_3029_10_44 52748 53218 - YpsA
pfam HRGMv2_3029_10 HRGMv2_3029_10_45 53315 53503 + RHH_1
TC HRGMv2_3029_10 HRGMv2_3029_10_46 53642 54469 - 3.A.1.132.3
TC HRGMv2_3029_10 HRGMv2_3029_10_47 54574 55245 - 9.B.18.1.2
TC HRGMv2_3029_10 HRGMv2_3029_10_48 55561 56205 + 9.B.18.1.2
Gene ID: HRGMv2_3029_10_39
Type: CAZyme
Location: 43756 - 45882 (-)
Gene ID: HRGMv2_3029_10_40
Type: STP
Location: 46156 - 47049 (+)
Gene ID: HRGMv2_3029_10_41
Type: pfam
Location: 47614 - 48273 (-)
Gene ID: HRGMv2_3029_10_42
Type: TC
Location: 48391 - 51753 (-)
Gene ID: HRGMv2_3029_10_43
Type: TC
Location: 51756 - 52457 (-)
Gene ID: HRGMv2_3029_10_44
Type: pfam
Location: 52748 - 53218 (-)
Gene ID: HRGMv2_3029_10_45
Type: pfam
Location: 53315 - 53503 (+)
Gene ID: HRGMv2_3029_10_46
Type: TC
Location: 53642 - 54469 (-)
Gene ID: HRGMv2_3029_10_47
Type: TC
Location: 54574 - 55245 (-)
Gene ID: HRGMv2_3029_10_48
Type: TC
Location: 55561 - 56205 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3029_10_46 vegetarian > vegan 1.40747 0.01057

🧭 Explore Read Mapping of CGC

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