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Cluster: HRGMv2_3028_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3028_14 HRGMv2_3028_14_47 41824 44250 - GT35
CAZyme HRGMv2_3028_14 HRGMv2_3028_14_48 44260 46017 - GT5
pfam HRGMv2_3028_14 HRGMv2_3028_14_49 46122 47234 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_3028_14 HRGMv2_3028_14_50 47231 48439 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_3028_14 HRGMv2_3028_14_51 48436 50358 - CBM48 | GH13_9
TC HRGMv2_3028_14 HRGMv2_3028_14_52 50736 51560 + 2.A.102.3.1
pfam HRGMv2_3028_14 HRGMv2_3028_14_53 51562 52278 + Asp_Glu_race
TC HRGMv2_3028_14 HRGMv2_3028_14_54 52439 53653 + 2.A.23.1.5
pfam HRGMv2_3028_14 HRGMv2_3028_14_55 53728 54594 - EamA
NULL(UNKNOWN) HRGMv2_3028_14 HRGMv2_3028_14_56 54601 54948 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3028_14 HRGMv2_3028_14_57 54999 56159 - GH33
Gene ID: HRGMv2_3028_14_47
Type: CAZyme
Location: 41824 - 44250 (-)
Gene ID: HRGMv2_3028_14_48
Type: CAZyme
Location: 44260 - 46017 (-)
Gene ID: HRGMv2_3028_14_49
Type: pfam
Location: 46122 - 47234 (-)
Gene ID: HRGMv2_3028_14_50
Type: pfam
Location: 47231 - 48439 (-)
Gene ID: HRGMv2_3028_14_51
Type: CAZyme
Location: 48436 - 50358 (-)
Gene ID: HRGMv2_3028_14_52
Type: TC
Location: 50736 - 51560 (+)
Gene ID: HRGMv2_3028_14_53
Type: pfam
Location: 51562 - 52278 (+)
Gene ID: HRGMv2_3028_14_54
Type: TC
Location: 52439 - 53653 (+)
Gene ID: HRGMv2_3028_14_55
Type: pfam
Location: 53728 - 54594 (-)
Gene ID: HRGMv2_3028_14_56
Type:
Location: 54601 - 54948 (-)
Gene ID: HRGMv2_3028_14_57
Type: CAZyme
Location: 54999 - 56159 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3028_14_52 vegetarian > omnivore 1.28884 0.00181
HRGMv2_3028_14_52 vegetarian > vegan 1.47198 0.00110
HRGMv2_3028_14_57 vegan > omnivore 1.21265 0.01560

🧭 Explore Read Mapping of CGC

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