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Cluster: HRGMv2_3027_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3027_16 HRGMv2_3027_16_8 6164 6913 + 9.B.18.1.3
CAZyme HRGMv2_3027_16 HRGMv2_3027_16_9 6910 7662 + GT2
CAZyme HRGMv2_3027_16 HRGMv2_3027_16_10 7682 8734 + GT4
CAZyme HRGMv2_3027_16 HRGMv2_3027_16_11 8770 9825 + GT4
pfam HRGMv2_3027_16 HRGMv2_3027_16_12 9847 11094 + Wzy_C
pfam HRGMv2_3027_16 HRGMv2_3027_16_13 11072 11992 + ATPgrasp_TupA
CAZyme HRGMv2_3027_16 HRGMv2_3027_16_14 12020 13042 + GT2
CAZyme HRGMv2_3027_16 HRGMv2_3027_16_15 13058 14029 + GT2
Gene ID: HRGMv2_3027_16_8
Type: TC
Location: 6164 - 6913 (+)
Gene ID: HRGMv2_3027_16_9
Type: CAZyme
Location: 6910 - 7662 (+)
Gene ID: HRGMv2_3027_16_10
Type: CAZyme
Location: 7682 - 8734 (+)
Gene ID: HRGMv2_3027_16_11
Type: CAZyme
Location: 8770 - 9825 (+)
Gene ID: HRGMv2_3027_16_12
Type: pfam
Location: 9847 - 11094 (+)
Gene ID: HRGMv2_3027_16_13
Type: pfam
Location: 11072 - 11992 (+)
Gene ID: HRGMv2_3027_16_14
Type: CAZyme
Location: 12020 - 13042 (+)
Gene ID: HRGMv2_3027_16_15
Type: CAZyme
Location: 13058 - 14029 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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