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Cluster: HRGMv2_3027_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3027_10 HRGMv2_3027_10_20 18504 19106 + 3.D.1.8.1
pfam HRGMv2_3027_10 HRGMv2_3027_10_21 19120 19998 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_3027_10 HRGMv2_3027_10_22 20000 20998 + GT2
CAZyme HRGMv2_3027_10 HRGMv2_3027_10_23 20998 21966 + GT2
TC HRGMv2_3027_10 HRGMv2_3027_10_24 22004 24358 - 1.C.105.2.8
pfam HRGMv2_3027_10 HRGMv2_3027_10_25 24348 25481 - Metallophos
TC HRGMv2_3027_10 HRGMv2_3027_10_26 25779 26276 + 3.D.1.5.1
Gene ID: HRGMv2_3027_10_20
Type: TC
Location: 18504 - 19106 (+)
Gene ID: HRGMv2_3027_10_21
Type: pfam
Location: 19120 - 19998 (+)
Gene ID: HRGMv2_3027_10_22
Type: CAZyme
Location: 20000 - 20998 (+)
Gene ID: HRGMv2_3027_10_23
Type: CAZyme
Location: 20998 - 21966 (+)
Gene ID: HRGMv2_3027_10_24
Type: TC
Location: 22004 - 24358 (-)
Gene ID: HRGMv2_3027_10_25
Type: pfam
Location: 24348 - 25481 (-)
Gene ID: HRGMv2_3027_10_26
Type: TC
Location: 25779 - 26276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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