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Cluster: HRGMv2_3027_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3027_2 HRGMv2_3027_2_3 1980 3635 + GH25
pfam HRGMv2_3027_2 HRGMv2_3027_2_4 3936 5882 + tRNA-synt_2b | TGS | HGTP_anticodon | tRNA_SAD
TC HRGMv2_3027_2 HRGMv2_3027_2_5 5943 6677 - 8.A.3.2.2
TC HRGMv2_3027_2 HRGMv2_3027_2_6 6689 7432 - 8.A.3.2.3
STP HRGMv2_3027_2 HRGMv2_3027_2_7 8067 9893 + SIS | SIS
CAZyme HRGMv2_3027_2 HRGMv2_3027_2_8 10073 12787 + GT2 | GT2
peptidase HRGMv2_3027_2 HRGMv2_3027_2_9 12831 14357 + C26.957
CAZyme HRGMv2_3027_2 HRGMv2_3027_2_10 14738 17593 + GH2
NULL(UNKNOWN) HRGMv2_3027_2 HRGMv2_3027_2_11 17647 19155 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3027_2 HRGMv2_3027_2_12 19148 20086 + 3.A.1.1.10
TC HRGMv2_3027_2 HRGMv2_3027_2_13 20098 20973 + 3.A.1.1.29
Gene ID: HRGMv2_3027_2_3
Type: CAZyme
Location: 1980 - 3635 (+)
Gene ID: HRGMv2_3027_2_4
Type: pfam
Location: 3936 - 5882 (+)
Gene ID: HRGMv2_3027_2_5
Type: TC
Location: 5943 - 6677 (-)
Gene ID: HRGMv2_3027_2_6
Type: TC
Location: 6689 - 7432 (-)
Gene ID: HRGMv2_3027_2_7
Type: STP
Location: 8067 - 9893 (+)
Gene ID: HRGMv2_3027_2_8
Type: CAZyme
Location: 10073 - 12787 (+)
Gene ID: HRGMv2_3027_2_9
Type: peptidase
Location: 12831 - 14357 (+)
Gene ID: HRGMv2_3027_2_10
Type: CAZyme
Location: 14738 - 17593 (+)
Gene ID: HRGMv2_3027_2_11
Type:
Location: 17647 - 19155 (+)
Gene ID: HRGMv2_3027_2_12
Type: TC
Location: 19148 - 20086 (+)
Gene ID: HRGMv2_3027_2_13
Type: TC
Location: 20098 - 20973 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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