Cluster: HRGMv2_3024_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3024
- CGC Family ID: CGCFAM_01164
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3024_35 | HRGMv2_3024_35_6 | 3376 | 4341 | + | 3.A.1.132.1 |
| TC | HRGMv2_3024_35 | HRGMv2_3024_35_7 | 4341 | 5045 | + | 3.A.1.132.1 |
| pfam | HRGMv2_3024_35 | HRGMv2_3024_35_8 | 5060 | 6670 | + | ABC_transp_aux | DUF7088 |
| pfam | HRGMv2_3024_35 | HRGMv2_3024_35_9 | 6670 | 8214 | + | DUF4340 | DUF4340 |
| CAZyme | HRGMv2_3024_35 | HRGMv2_3024_35_10 | 8509 | 9468 | + | GT2 |
Gene ID: HRGMv2_3024_35_6
Type: TC
Location: 3376 - 4341 (+)
Type: TC
Location: 3376 - 4341 (+)
Gene ID: HRGMv2_3024_35_7
Type: TC
Location: 4341 - 5045 (+)
Type: TC
Location: 4341 - 5045 (+)
Gene ID: HRGMv2_3024_35_8
Type: pfam
Location: 5060 - 6670 (+)
Type: pfam
Location: 5060 - 6670 (+)
Gene ID: HRGMv2_3024_35_9
Type: pfam
Location: 6670 - 8214 (+)
Type: pfam
Location: 6670 - 8214 (+)
Gene ID: HRGMv2_3024_35_10
Type: CAZyme
Location: 8509 - 9468 (+)
Type: CAZyme
Location: 8509 - 9468 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp958403905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.