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Cluster: HRGMv2_3023_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3023_39 HRGMv2_3023_39_10 5253 7730 + 9.A.8.1.9
pfam HRGMv2_3023_39 HRGMv2_3023_39_11 7747 7917 + FeoB_associated
pfam HRGMv2_3023_39 HRGMv2_3023_39_12 8057 9607 + Resolvase | Recombinase | Zn_ribbon_recom
TC HRGMv2_3023_39 HRGMv2_3023_39_13 9597 10952 - 2.A.66.1.37
NULL(UNKNOWN) HRGMv2_3023_39 HRGMv2_3023_39_14 11091 11267 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3023_39 HRGMv2_3023_39_15 11281 11526 - 4.A.1.1.11
TC HRGMv2_3023_39 HRGMv2_3023_39_16 11742 12221 - 1.E.19.1.5
CAZyme HRGMv2_3023_39 HRGMv2_3023_39_17 12276 13037 - GH25
Gene ID: HRGMv2_3023_39_10
Type: TC
Location: 5253 - 7730 (+)
Gene ID: HRGMv2_3023_39_11
Type: pfam
Location: 7747 - 7917 (+)
Gene ID: HRGMv2_3023_39_12
Type: pfam
Location: 8057 - 9607 (+)
Gene ID: HRGMv2_3023_39_13
Type: TC
Location: 9597 - 10952 (-)
Gene ID: HRGMv2_3023_39_14
Type:
Location: 11091 - 11267 (-)
Gene ID: HRGMv2_3023_39_15
Type: TC
Location: 11281 - 11526 (-)
Gene ID: HRGMv2_3023_39_16
Type: TC
Location: 11742 - 12221 (-)
Gene ID: HRGMv2_3023_39_17
Type: CAZyme
Location: 12276 - 13037 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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