Cluster: HRGMv2_3023_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3023
- CGC Family ID: CGCFAM_03122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3023_11 | HRGMv2_3023_11_25 | 20184 | 21071 | - | 3.A.1.126.1 |
| pfam | HRGMv2_3023_11 | HRGMv2_3023_11_26 | 21068 | 22480 | - | bPH_5 | DUF5808 |
| TF | HRGMv2_3023_11 | HRGMv2_3023_11_27 | 22484 | 22855 | - | GntR |
| CAZyme | HRGMv2_3023_11 | HRGMv2_3023_11_28 | 22975 | 23796 | - | CE4 |
| pfam | HRGMv2_3023_11 | HRGMv2_3023_11_29 | 23858 | 25264 | - | tRNA-synt_1 | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | tRNA-synt_1g | CysS_C |
| pfam | HRGMv2_3023_11 | HRGMv2_3023_11_30 | 25261 | 25896 | - | Hexapep | Hexapep_2 |
| TC | HRGMv2_3023_11 | HRGMv2_3023_11_31 | 26515 | 27108 | - | 4.F.1.1.7 |
Gene ID: HRGMv2_3023_11_25
Type: TC
Location: 20184 - 21071 (-)
Type: TC
Location: 20184 - 21071 (-)
Gene ID: HRGMv2_3023_11_26
Type: pfam
Location: 21068 - 22480 (-)
Type: pfam
Location: 21068 - 22480 (-)
Gene ID: HRGMv2_3023_11_27
Type: TF
Location: 22484 - 22855 (-)
Type: TF
Location: 22484 - 22855 (-)
Gene ID: HRGMv2_3023_11_28
Type: CAZyme
Location: 22975 - 23796 (-)
Type: CAZyme
Location: 22975 - 23796 (-)
Gene ID: HRGMv2_3023_11_29
Type: pfam
Location: 23858 - 25264 (-)
Type: pfam
Location: 23858 - 25264 (-)
Gene ID: HRGMv2_3023_11_30
Type: pfam
Location: 25261 - 25896 (-)
Type: pfam
Location: 25261 - 25896 (-)
Gene ID: HRGMv2_3023_11_31
Type: TC
Location: 26515 - 27108 (-)
Type: TC
Location: 26515 - 27108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Limousia
Species
Limousia pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.