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Cluster: HRGMv2_3019_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3019_28 HRGMv2_3019_28_4 2024 3580 - 2.A.66.1.40
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_5 3600 4637 - GT2
pfam HRGMv2_3019_28 HRGMv2_3019_28_6 4659 5456 - LicD
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_7 5458 6531 - GT4
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_8 6528 7601 - GT4
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_9 7598 8719 - GT4
pfam HRGMv2_3019_28 HRGMv2_3019_28_10 8735 9856 - EpsG
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_11 9873 10658 - GT2
CAZyme HRGMv2_3019_28 HRGMv2_3019_28_12 10669 11811 - GT4
pfam HRGMv2_3019_28 HRGMv2_3019_28_13 11818 12432 - Hexapep | PglD_N
TC HRGMv2_3019_28 HRGMv2_3019_28_14 12425 13063 - 9.B.18.1.2
Gene ID: HRGMv2_3019_28_4
Type: TC
Location: 2024 - 3580 (-)
Gene ID: HRGMv2_3019_28_5
Type: CAZyme
Location: 3600 - 4637 (-)
Gene ID: HRGMv2_3019_28_6
Type: pfam
Location: 4659 - 5456 (-)
Gene ID: HRGMv2_3019_28_7
Type: CAZyme
Location: 5458 - 6531 (-)
Gene ID: HRGMv2_3019_28_8
Type: CAZyme
Location: 6528 - 7601 (-)
Gene ID: HRGMv2_3019_28_9
Type: CAZyme
Location: 7598 - 8719 (-)
Gene ID: HRGMv2_3019_28_10
Type: pfam
Location: 8735 - 9856 (-)
Gene ID: HRGMv2_3019_28_11
Type: CAZyme
Location: 9873 - 10658 (-)
Gene ID: HRGMv2_3019_28_12
Type: CAZyme
Location: 10669 - 11811 (-)
Gene ID: HRGMv2_3019_28_13
Type: pfam
Location: 11818 - 12432 (-)
Gene ID: HRGMv2_3019_28_14
Type: TC
Location: 12425 - 13063 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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