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Cluster: HRGMv2_3018_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3018_2 HRGMv2_3018_2_37 38009 39490 + GH29
pfam HRGMv2_3018_2 HRGMv2_3018_2_38 39569 39985 - ATP-synt_DE | ATP-synt_DE_N
TC HRGMv2_3018_2 HRGMv2_3018_2_39 40005 41399 - 3.A.2.1.5
TC HRGMv2_3018_2 HRGMv2_3018_2_40 41415 42302 - 3.A.2.1.5
TC HRGMv2_3018_2 HRGMv2_3018_2_41 42295 43809 - 3.A.2.1.6
pfam HRGMv2_3018_2 HRGMv2_3018_2_42 43810 44319 - OSCP
pfam HRGMv2_3018_2 HRGMv2_3018_2_43 44300 44800 - ATP-synt_B
TC HRGMv2_3018_2 HRGMv2_3018_2_44 44837 45064 - 3.A.2.1.2
TC HRGMv2_3018_2 HRGMv2_3018_2_45 45122 45817 - 3.A.2.1.5
pfam HRGMv2_3018_2 HRGMv2_3018_2_46 46084 47142 + adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | GDP_Man_Dehyd
pfam HRGMv2_3018_2 HRGMv2_3018_2_47 47406 48698 + Rieske | DAO | FAD_binding_3
CAZyme HRGMv2_3018_2 HRGMv2_3018_2_48 48826 50178 + GH29
TC HRGMv2_3018_2 HRGMv2_3018_2_49 50320 51654 - 2.A.66.1.33
pfam HRGMv2_3018_2 HRGMv2_3018_2_50 51842 53323 + Metallophos
CAZyme HRGMv2_3018_2 HRGMv2_3018_2_51 53850 56111 + GH51_2
Gene ID: HRGMv2_3018_2_37
Type: CAZyme
Location: 38009 - 39490 (+)
Gene ID: HRGMv2_3018_2_38
Type: pfam
Location: 39569 - 39985 (-)
Gene ID: HRGMv2_3018_2_39
Type: TC
Location: 40005 - 41399 (-)
Gene ID: HRGMv2_3018_2_40
Type: TC
Location: 41415 - 42302 (-)
Gene ID: HRGMv2_3018_2_41
Type: TC
Location: 42295 - 43809 (-)
Gene ID: HRGMv2_3018_2_42
Type: pfam
Location: 43810 - 44319 (-)
Gene ID: HRGMv2_3018_2_43
Type: pfam
Location: 44300 - 44800 (-)
Gene ID: HRGMv2_3018_2_44
Type: TC
Location: 44837 - 45064 (-)
Gene ID: HRGMv2_3018_2_45
Type: TC
Location: 45122 - 45817 (-)
Gene ID: HRGMv2_3018_2_46
Type: pfam
Location: 46084 - 47142 (+)
Gene ID: HRGMv2_3018_2_47
Type: pfam
Location: 47406 - 48698 (+)
Gene ID: HRGMv2_3018_2_48
Type: CAZyme
Location: 48826 - 50178 (+)
Gene ID: HRGMv2_3018_2_49
Type: TC
Location: 50320 - 51654 (-)
Gene ID: HRGMv2_3018_2_50
Type: pfam
Location: 51842 - 53323 (+)
Gene ID: HRGMv2_3018_2_51
Type: CAZyme
Location: 53850 - 56111 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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