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Cluster: HRGMv2_3018_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3018_1 HRGMv2_3018_1_122 125909 128032 + GH89
TC HRGMv2_3018_1 HRGMv2_3018_1_123 128103 128825 - 3.A.1.3.25
TC HRGMv2_3018_1 HRGMv2_3018_1_124 128809 129519 - 3.A.1.3.20
STP HRGMv2_3018_1 HRGMv2_3018_1_125 129666 130541 - SBP_bac_3
TC HRGMv2_3018_1 HRGMv2_3018_1_126 130764 132206 - 2.A.25.1.4
CAZyme HRGMv2_3018_1 HRGMv2_3018_1_127 132463 135453 - GH2
TC HRGMv2_3018_1 HRGMv2_3018_1_128 135531 137093 - 2.A.2.3.6
pfam HRGMv2_3018_1 HRGMv2_3018_1_129 137392 138354 - NAD_Gly3P_dh_N | ApbA | F420_oxidored | NAD_Gly3P_dh_C | GPD_NAD_C_bact
TC HRGMv2_3018_1 HRGMv2_3018_1_130 138361 139746 - 1.A.26.1.2
Gene ID: HRGMv2_3018_1_122
Type: CAZyme
Location: 125909 - 128032 (+)
Gene ID: HRGMv2_3018_1_123
Type: TC
Location: 128103 - 128825 (-)
Gene ID: HRGMv2_3018_1_124
Type: TC
Location: 128809 - 129519 (-)
Gene ID: HRGMv2_3018_1_125
Type: STP
Location: 129666 - 130541 (-)
Gene ID: HRGMv2_3018_1_126
Type: TC
Location: 130764 - 132206 (-)
Gene ID: HRGMv2_3018_1_127
Type: CAZyme
Location: 132463 - 135453 (-)
Gene ID: HRGMv2_3018_1_128
Type: TC
Location: 135531 - 137093 (-)
Gene ID: HRGMv2_3018_1_129
Type: pfam
Location: 137392 - 138354 (-)
Gene ID: HRGMv2_3018_1_130
Type: TC
Location: 138361 - 139746 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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