Cluster: HRGMv2_3018_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3018
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3018_5 | HRGMv2_3018_5_101 | 107680 | 108531 | - | 3.A.1.103.4 |
| CAZyme | HRGMv2_3018_5 | HRGMv2_3018_5_102 | 108677 | 110860 | - | GT2 |
| STP | HRGMv2_3018_5 | HRGMv2_3018_5_103 | 110991 | 111488 | - | SKI |
| pfam | HRGMv2_3018_5 | HRGMv2_3018_5_104 | 111485 | 112309 | - | Shikimate_dh_N |
| TC | HRGMv2_3018_5 | HRGMv2_3018_5_105 | 112437 | 112664 | + | 3.D.1.6.1 |
Gene ID: HRGMv2_3018_5_101
Type: TC
Location: 107680 - 108531 (-)
Type: TC
Location: 107680 - 108531 (-)
Gene ID: HRGMv2_3018_5_102
Type: CAZyme
Location: 108677 - 110860 (-)
Type: CAZyme
Location: 108677 - 110860 (-)
Gene ID: HRGMv2_3018_5_103
Type: STP
Location: 110991 - 111488 (-)
Type: STP
Location: 110991 - 111488 (-)
Gene ID: HRGMv2_3018_5_104
Type: pfam
Location: 111485 - 112309 (-)
Type: pfam
Location: 111485 - 112309 (-)
Gene ID: HRGMv2_3018_5_105
Type: TC
Location: 112437 - 112664 (+)
Type: TC
Location: 112437 - 112664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus sp900540085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.