Cluster: HRGMv2_3018_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_3018
- CGC Family ID: CGCFAM_00315
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_130 | 143524 | 144420 | - | GT2 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_131 | 144417 | 145271 | - | GT14 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_132 | 145273 | 146256 | - | GT2 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_133 | 146269 | 147273 | - | GT2 |
| pfam | HRGMv2_3018_3 | HRGMv2_3018_3_134 | 147286 | 148470 | - | EpsG |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_135 | 148484 | 149605 | - | GT4 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_136 | 149616 | 151823 | - | GT4 | GT4 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_137 | 151831 | 152955 | - | GT4 |
| pfam | HRGMv2_3018_3 | HRGMv2_3018_3_138 | 152961 | 153872 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | HRGMv2_3018_3 | HRGMv2_3018_3_139 | 153869 | 154690 | - | HpcH_HpaI |
| TC | HRGMv2_3018_3 | HRGMv2_3018_3_140 | 154690 | 155325 | - | 9.B.18.1.3 |
| pfam | HRGMv2_3018_3 | HRGMv2_3018_3_141 | 155461 | 156306 | + | VanZ |
| TC | HRGMv2_3018_3 | HRGMv2_3018_3_142 | 156372 | 157667 | - | 2.A.1.84.3 |
| TC | HRGMv2_3018_3 | HRGMv2_3018_3_143 | 157982 | 159346 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_3018_3 | HRGMv2_3018_3_144 | 159348 | 161591 | + | GH2 |
Gene ID: HRGMv2_3018_3_130
Type: CAZyme
Location: 143524 - 144420 (-)
Type: CAZyme
Location: 143524 - 144420 (-)
Gene ID: HRGMv2_3018_3_131
Type: CAZyme
Location: 144417 - 145271 (-)
Type: CAZyme
Location: 144417 - 145271 (-)
Gene ID: HRGMv2_3018_3_132
Type: CAZyme
Location: 145273 - 146256 (-)
Type: CAZyme
Location: 145273 - 146256 (-)
Gene ID: HRGMv2_3018_3_133
Type: CAZyme
Location: 146269 - 147273 (-)
Type: CAZyme
Location: 146269 - 147273 (-)
Gene ID: HRGMv2_3018_3_134
Type: pfam
Location: 147286 - 148470 (-)
Type: pfam
Location: 147286 - 148470 (-)
Gene ID: HRGMv2_3018_3_135
Type: CAZyme
Location: 148484 - 149605 (-)
Type: CAZyme
Location: 148484 - 149605 (-)
Gene ID: HRGMv2_3018_3_136
Type: CAZyme
Location: 149616 - 151823 (-)
Type: CAZyme
Location: 149616 - 151823 (-)
Gene ID: HRGMv2_3018_3_137
Type: CAZyme
Location: 151831 - 152955 (-)
Type: CAZyme
Location: 151831 - 152955 (-)
Gene ID: HRGMv2_3018_3_138
Type: pfam
Location: 152961 - 153872 (-)
Type: pfam
Location: 152961 - 153872 (-)
Gene ID: HRGMv2_3018_3_139
Type: pfam
Location: 153869 - 154690 (-)
Type: pfam
Location: 153869 - 154690 (-)
Gene ID: HRGMv2_3018_3_140
Type: TC
Location: 154690 - 155325 (-)
Type: TC
Location: 154690 - 155325 (-)
Gene ID: HRGMv2_3018_3_141
Type: pfam
Location: 155461 - 156306 (+)
Type: pfam
Location: 155461 - 156306 (+)
Gene ID: HRGMv2_3018_3_142
Type: TC
Location: 156372 - 157667 (-)
Type: TC
Location: 156372 - 157667 (-)
Gene ID: HRGMv2_3018_3_143
Type: TC
Location: 157982 - 159346 (+)
Type: TC
Location: 157982 - 159346 (+)
Gene ID: HRGMv2_3018_3_144
Type: CAZyme
Location: 159348 - 161591 (+)
Type: CAZyme
Location: 159348 - 161591 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus sp900540085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.