Cluster: HRGMv2_3017_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3017
- CGC Family ID: CGCFAM_00231
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3017_6 | HRGMv2_3017_6_32 | 29612 | 30391 | + | CE4 |
| TC | HRGMv2_3017_6 | HRGMv2_3017_6_33 | 30505 | 31719 | - | 3.B.1.1.3 |
| TC | HRGMv2_3017_6 | HRGMv2_3017_6_34 | 31732 | 32133 | - | 3.B.1.1.2 |
| pfam | HRGMv2_3017_6 | HRGMv2_3017_6_35 | 32136 | 32486 | - | OAD_gamma |
| TC | HRGMv2_3017_6 | HRGMv2_3017_6_36 | 32502 | 33911 | - | 3.B.1.1.6 |
Gene ID: HRGMv2_3017_6_32
Type: CAZyme
Location: 29612 - 30391 (+)
Type: CAZyme
Location: 29612 - 30391 (+)
Gene ID: HRGMv2_3017_6_33
Type: TC
Location: 30505 - 31719 (-)
Type: TC
Location: 30505 - 31719 (-)
Gene ID: HRGMv2_3017_6_34
Type: TC
Location: 31732 - 32133 (-)
Type: TC
Location: 31732 - 32133 (-)
Gene ID: HRGMv2_3017_6_35
Type: pfam
Location: 32136 - 32486 (-)
Type: pfam
Location: 32136 - 32486 (-)
Gene ID: HRGMv2_3017_6_36
Type: TC
Location: 32502 - 33911 (-)
Type: TC
Location: 32502 - 33911 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900547405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3017_6_32 | vegetarian > omnivore | 1.91627 | 0.00701 |
| HRGMv2_3017_6_35 | vegetarian > omnivore | 1.28034 | 0.00701 |