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Cluster: HRGMv2_3017_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3017_5 HRGMv2_3017_5_29 29904 31595 - 3.A.1.5.20
STP HRGMv2_3017_5 HRGMv2_3017_5_30 32220 33386 - GGDEF
TF HRGMv2_3017_5 HRGMv2_3017_5_31 33538 33789 - HTH_3
TC HRGMv2_3017_5 HRGMv2_3017_5_32 34329 35720 + 9.B.18.1.3
pfam HRGMv2_3017_5 HRGMv2_3017_5_33 35818 36165 + VanZ
TC HRGMv2_3017_5 HRGMv2_3017_5_34 36162 37658 + 9.B.18.1.2
CAZyme HRGMv2_3017_5 HRGMv2_3017_5_35 37667 38791 + GT4
pfam HRGMv2_3017_5 HRGMv2_3017_5_36 38812 40002 + PS_pyruv_trans
pfam HRGMv2_3017_5 HRGMv2_3017_5_37 39999 41189 + FrhB_FdhB_N | FrhB_FdhB_C
CAZyme HRGMv2_3017_5 HRGMv2_3017_5_38 41212 42312 + GT4
CAZyme HRGMv2_3017_5 HRGMv2_3017_5_39 42317 43339 + GT8
CAZyme HRGMv2_3017_5 HRGMv2_3017_5_40 43333 44277 + GT11
NULL(UNKNOWN) HRGMv2_3017_5 HRGMv2_3017_5_41 44321 45490 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3017_5 HRGMv2_3017_5_42 45777 46442 + Hexapep
TC HRGMv2_3017_5 HRGMv2_3017_5_43 46435 47949 + 2.A.66.1.40
Gene ID: HRGMv2_3017_5_29
Type: TC
Location: 29904 - 31595 (-)
Gene ID: HRGMv2_3017_5_30
Type: STP
Location: 32220 - 33386 (-)
Gene ID: HRGMv2_3017_5_31
Type: TF
Location: 33538 - 33789 (-)
Gene ID: HRGMv2_3017_5_32
Type: TC
Location: 34329 - 35720 (+)
Gene ID: HRGMv2_3017_5_33
Type: pfam
Location: 35818 - 36165 (+)
Gene ID: HRGMv2_3017_5_34
Type: TC
Location: 36162 - 37658 (+)
Gene ID: HRGMv2_3017_5_35
Type: CAZyme
Location: 37667 - 38791 (+)
Gene ID: HRGMv2_3017_5_36
Type: pfam
Location: 38812 - 40002 (+)
Gene ID: HRGMv2_3017_5_37
Type: pfam
Location: 39999 - 41189 (+)
Gene ID: HRGMv2_3017_5_38
Type: CAZyme
Location: 41212 - 42312 (+)
Gene ID: HRGMv2_3017_5_39
Type: CAZyme
Location: 42317 - 43339 (+)
Gene ID: HRGMv2_3017_5_40
Type: CAZyme
Location: 43333 - 44277 (+)
Gene ID: HRGMv2_3017_5_41
Type:
Location: 44321 - 45490 (+)
Gene ID: HRGMv2_3017_5_42
Type: pfam
Location: 45777 - 46442 (+)
Gene ID: HRGMv2_3017_5_43
Type: TC
Location: 46435 - 47949 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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