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Cluster: HRGMv2_3017_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3017_4 HRGMv2_3017_4_40 38913 39923 - GT2
CAZyme HRGMv2_3017_4 HRGMv2_3017_4_41 40091 41176 - GT2
CAZyme HRGMv2_3017_4 HRGMv2_3017_4_42 41173 42243 - GT4
CAZyme HRGMv2_3017_4 HRGMv2_3017_4_43 42287 43324 - GT4
NULL(UNKNOWN) HRGMv2_3017_4 HRGMv2_3017_4_44 43545 45332 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3017_4 HRGMv2_3017_4_45 45307 46188 - 3.A.1.131.3
TF HRGMv2_3017_4 HRGMv2_3017_4_46 46181 46546 - GntR
pfam HRGMv2_3017_4 HRGMv2_3017_4_47 46920 48263 - DUF1576 | DUF1576
TC HRGMv2_3017_4 HRGMv2_3017_4_48 48322 49122 - 1.A.16.1.3
Gene ID: HRGMv2_3017_4_40
Type: CAZyme
Location: 38913 - 39923 (-)
Gene ID: HRGMv2_3017_4_41
Type: CAZyme
Location: 40091 - 41176 (-)
Gene ID: HRGMv2_3017_4_42
Type: CAZyme
Location: 41173 - 42243 (-)
Gene ID: HRGMv2_3017_4_43
Type: CAZyme
Location: 42287 - 43324 (-)
Gene ID: HRGMv2_3017_4_44
Type:
Location: 43545 - 45332 (-)
Gene ID: HRGMv2_3017_4_45
Type: TC
Location: 45307 - 46188 (-)
Gene ID: HRGMv2_3017_4_46
Type: TF
Location: 46181 - 46546 (-)
Gene ID: HRGMv2_3017_4_47
Type: pfam
Location: 46920 - 48263 (-)
Gene ID: HRGMv2_3017_4_48
Type: TC
Location: 48322 - 49122 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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