dbCAN Logo

Cluster: HRGMv2_3017_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3017_9 HRGMv2_3017_9_14 16387 17757 - 5.A.1.6.1
STP HRGMv2_3017_9 HRGMv2_3017_9_15 17886 18836 - HD
NULL(UNKNOWN) HRGMv2_3017_9 HRGMv2_3017_9_16 19210 21090 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3017_9 HRGMv2_3017_9_17 21732 22862 + CE9
pfam HRGMv2_3017_9 HRGMv2_3017_9_18 22976 23398 - VanZ
TC HRGMv2_3017_9 HRGMv2_3017_9_19 23420 23983 - 2.A.107.1.2
pfam HRGMv2_3017_9 HRGMv2_3017_9_20 24015 24323 - AzlD
pfam HRGMv2_3017_9 HRGMv2_3017_9_21 24324 25025 - AzlC
TC HRGMv2_3017_9 HRGMv2_3017_9_22 25169 25984 - 3.A.1.24.5
TC HRGMv2_3017_9 HRGMv2_3017_9_23 26215 26925 - 3.A.1.24.5
TC HRGMv2_3017_9 HRGMv2_3017_9_24 26918 27928 - 3.A.1.24.1
Gene ID: HRGMv2_3017_9_14
Type: TC
Location: 16387 - 17757 (-)
Gene ID: HRGMv2_3017_9_15
Type: STP
Location: 17886 - 18836 (-)
Gene ID: HRGMv2_3017_9_16
Type:
Location: 19210 - 21090 (-)
Gene ID: HRGMv2_3017_9_17
Type: CAZyme
Location: 21732 - 22862 (+)
Gene ID: HRGMv2_3017_9_18
Type: pfam
Location: 22976 - 23398 (-)
Gene ID: HRGMv2_3017_9_19
Type: TC
Location: 23420 - 23983 (-)
Gene ID: HRGMv2_3017_9_20
Type: pfam
Location: 24015 - 24323 (-)
Gene ID: HRGMv2_3017_9_21
Type: pfam
Location: 24324 - 25025 (-)
Gene ID: HRGMv2_3017_9_22
Type: TC
Location: 25169 - 25984 (-)
Gene ID: HRGMv2_3017_9_23
Type: TC
Location: 26215 - 26925 (-)
Gene ID: HRGMv2_3017_9_24
Type: TC
Location: 26918 - 27928 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3017_9_21 vegetarian > omnivore 1.06269 0.00701

🧭 Explore Read Mapping of CGC

← Back to Cluster List