Cluster: HRGMv2_3016_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3016
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3016_9 | HRGMv2_3016_9_20 | 21666 | 22538 | + | 3.A.1.26.7 |
| TC | HRGMv2_3016_9 | HRGMv2_3016_9_21 | 22535 | 23398 | + | 3.A.1.26.7 |
| TC | HRGMv2_3016_9 | HRGMv2_3016_9_22 | 23395 | 24231 | + | 3.A.1.26.7 |
| pfam | HRGMv2_3016_9 | HRGMv2_3016_9_23 | 24240 | 24980 | + | PseudoU_synth_1 | PseudoU_synth_1 |
| CAZyme | HRGMv2_3016_9 | HRGMv2_3016_9_24 | 25097 | 27403 | + | GT51 |
| TF | HRGMv2_3016_9 | HRGMv2_3016_9_25 | 27497 | 27946 | + | MarR |
| TC | HRGMv2_3016_9 | HRGMv2_3016_9_26 | 27948 | 29693 | + | 3.A.1.135.5 |
| TC | HRGMv2_3016_9 | HRGMv2_3016_9_27 | 29677 | 31635 | + | 3.A.1.135.5 |
Gene ID: HRGMv2_3016_9_20
Type: TC
Location: 21666 - 22538 (+)
Type: TC
Location: 21666 - 22538 (+)
Gene ID: HRGMv2_3016_9_21
Type: TC
Location: 22535 - 23398 (+)
Type: TC
Location: 22535 - 23398 (+)
Gene ID: HRGMv2_3016_9_22
Type: TC
Location: 23395 - 24231 (+)
Type: TC
Location: 23395 - 24231 (+)
Gene ID: HRGMv2_3016_9_23
Type: pfam
Location: 24240 - 24980 (+)
Type: pfam
Location: 24240 - 24980 (+)
Gene ID: HRGMv2_3016_9_24
Type: CAZyme
Location: 25097 - 27403 (+)
Type: CAZyme
Location: 25097 - 27403 (+)
Gene ID: HRGMv2_3016_9_25
Type: TF
Location: 27497 - 27946 (+)
Type: TF
Location: 27497 - 27946 (+)
Gene ID: HRGMv2_3016_9_26
Type: TC
Location: 27948 - 29693 (+)
Type: TC
Location: 27948 - 29693 (+)
Gene ID: HRGMv2_3016_9_27
Type: TC
Location: 29677 - 31635 (+)
Type: TC
Location: 29677 - 31635 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UBA1740
Species
UBA1740 sp934432675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.