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Cluster: HRGMv2_3011_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3011_15 HRGMv2_3011_15_11 8562 10205 + 3.D.10.1.2
pfam HRGMv2_3011_15 HRGMv2_3011_15_12 10818 12176 + BppU_N
NULL(UNKNOWN) HRGMv2_3011_15 HRGMv2_3011_15_13 12198 12485 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3011_15 HRGMv2_3011_15_14 12554 14749 - CBM13 | GT8
pfam HRGMv2_3011_15 HRGMv2_3011_15_15 15148 15771 + PRK | KAP_NTPase
NULL(UNKNOWN) HRGMv2_3011_15 HRGMv2_3011_15_16 16109 16204 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3011_15 HRGMv2_3011_15_17 16293 17561 + GT2
CAZyme HRGMv2_3011_15 HRGMv2_3011_15_18 17558 18253 + CE4
Gene ID: HRGMv2_3011_15_11
Type: TC
Location: 8562 - 10205 (+)
Gene ID: HRGMv2_3011_15_12
Type: pfam
Location: 10818 - 12176 (+)
Gene ID: HRGMv2_3011_15_13
Type:
Location: 12198 - 12485 (+)
Gene ID: HRGMv2_3011_15_14
Type: CAZyme
Location: 12554 - 14749 (-)
Gene ID: HRGMv2_3011_15_15
Type: pfam
Location: 15148 - 15771 (+)
Gene ID: HRGMv2_3011_15_16
Type:
Location: 16109 - 16204 (+)
Gene ID: HRGMv2_3011_15_17
Type: CAZyme
Location: 16293 - 17561 (+)
Gene ID: HRGMv2_3011_15_18
Type: CAZyme
Location: 17558 - 18253 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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