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Cluster: HRGMv2_3011_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3011_12 HRGMv2_3011_12_15 12187 14031 + 1.A.33.1.4
pfam HRGMv2_3011_12 HRGMv2_3011_12_16 14149 15306 + DnaJ | DnaJ_CXXCXGXG | DnaJ_C
pfam HRGMv2_3011_12 HRGMv2_3011_12_17 15449 16366 + PCMT | MTS | PrmA | Methyltransf_11 | Methyltransf_18 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_3011_12 HRGMv2_3011_12_18 16385 18652 + 3.A.1.135.7
TC HRGMv2_3011_12 HRGMv2_3011_12_19 18649 20538 + 3.A.1.135.6
NULL(UNKNOWN) HRGMv2_3011_12 HRGMv2_3011_12_20 20570 20824 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_3011_12 HRGMv2_3011_12_21 20858 21589 - M20.UNW
TC HRGMv2_3011_12 HRGMv2_3011_12_22 21717 22748 - 4.D.2.1.5
CAZyme HRGMv2_3011_12 HRGMv2_3011_12_23 22773 23774 - GT2
CAZyme HRGMv2_3011_12 HRGMv2_3011_12_24 23792 24772 - GT2
Gene ID: HRGMv2_3011_12_15
Type: TC
Location: 12187 - 14031 (+)
Gene ID: HRGMv2_3011_12_16
Type: pfam
Location: 14149 - 15306 (+)
Gene ID: HRGMv2_3011_12_17
Type: pfam
Location: 15449 - 16366 (+)
Gene ID: HRGMv2_3011_12_18
Type: TC
Location: 16385 - 18652 (+)
Gene ID: HRGMv2_3011_12_19
Type: TC
Location: 18649 - 20538 (+)
Gene ID: HRGMv2_3011_12_20
Type:
Location: 20570 - 20824 (+)
Gene ID: HRGMv2_3011_12_21
Type: peptidase
Location: 20858 - 21589 (-)
Gene ID: HRGMv2_3011_12_22
Type: TC
Location: 21717 - 22748 (-)
Gene ID: HRGMv2_3011_12_23
Type: CAZyme
Location: 22773 - 23774 (-)
Gene ID: HRGMv2_3011_12_24
Type: CAZyme
Location: 23792 - 24772 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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