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Cluster: HRGMv2_3004_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3004_18 HRGMv2_3004_18_4 1951 2919 + 2.A.19.5.3
STP HRGMv2_3004_18 HRGMv2_3004_18_5 2974 3588 - NUDIX
pfam HRGMv2_3004_18 HRGMv2_3004_18_6 3585 4478 - DAGK_cat | YegS_C
TC HRGMv2_3004_18 HRGMv2_3004_18_7 4639 5880 + 2.A.86.1.8
TC HRGMv2_3004_18 HRGMv2_3004_18_8 6065 7591 + 3.A.1.5.27
TC HRGMv2_3004_18 HRGMv2_3004_18_9 7643 8593 + 3.A.1.5.32
TC HRGMv2_3004_18 HRGMv2_3004_18_10 8590 9396 + 3.A.1.5.27
TC HRGMv2_3004_18 HRGMv2_3004_18_11 9398 10189 + 3.A.1.5.39
TC HRGMv2_3004_18 HRGMv2_3004_18_12 10186 10929 + 3.A.1.5.10
pfam HRGMv2_3004_18 HRGMv2_3004_18_13 10934 12037 + DUF3810
CAZyme HRGMv2_3004_18 HRGMv2_3004_18_14 12051 12872 + GT8
STP HRGMv2_3004_18 HRGMv2_3004_18_15 12924 14807 - HATPase_c
NULL(UNKNOWN) HRGMv2_3004_18 HRGMv2_3004_18_16 14993 15421 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3004_18 HRGMv2_3004_18_17 15443 16210 + 2.A.79.1.4
Gene ID: HRGMv2_3004_18_4
Type: TC
Location: 1951 - 2919 (+)
Gene ID: HRGMv2_3004_18_5
Type: STP
Location: 2974 - 3588 (-)
Gene ID: HRGMv2_3004_18_6
Type: pfam
Location: 3585 - 4478 (-)
Gene ID: HRGMv2_3004_18_7
Type: TC
Location: 4639 - 5880 (+)
Gene ID: HRGMv2_3004_18_8
Type: TC
Location: 6065 - 7591 (+)
Gene ID: HRGMv2_3004_18_9
Type: TC
Location: 7643 - 8593 (+)
Gene ID: HRGMv2_3004_18_10
Type: TC
Location: 8590 - 9396 (+)
Gene ID: HRGMv2_3004_18_11
Type: TC
Location: 9398 - 10189 (+)
Gene ID: HRGMv2_3004_18_12
Type: TC
Location: 10186 - 10929 (+)
Gene ID: HRGMv2_3004_18_13
Type: pfam
Location: 10934 - 12037 (+)
Gene ID: HRGMv2_3004_18_14
Type: CAZyme
Location: 12051 - 12872 (+)
Gene ID: HRGMv2_3004_18_15
Type: STP
Location: 12924 - 14807 (-)
Gene ID: HRGMv2_3004_18_16
Type:
Location: 14993 - 15421 (+)
Gene ID: HRGMv2_3004_18_17
Type: TC
Location: 15443 - 16210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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