Cluster: HRGMv2_3004_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3004
- CGC Family ID: CGCFAM_00890
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3004_12 | HRGMv2_3004_12_52 | 61766 | 62782 | + | GT2 |
| pfam | HRGMv2_3004_12 | HRGMv2_3004_12_53 | 62805 | 64325 | + | Wzy_C |
| pfam | HRGMv2_3004_12 | HRGMv2_3004_12_54 | 64887 | 66278 | + | DUF4417 |
| TC | HRGMv2_3004_12 | HRGMv2_3004_12_55 | 66524 | 67897 | - | 2.A.66.1.28 |
Gene ID: HRGMv2_3004_12_52
Type: CAZyme
Location: 61766 - 62782 (+)
Type: CAZyme
Location: 61766 - 62782 (+)
Gene ID: HRGMv2_3004_12_53
Type: pfam
Location: 62805 - 64325 (+)
Type: pfam
Location: 62805 - 64325 (+)
Gene ID: HRGMv2_3004_12_54
Type: pfam
Location: 64887 - 66278 (+)
Type: pfam
Location: 64887 - 66278 (+)
Gene ID: HRGMv2_3004_12_55
Type: TC
Location: 66524 - 67897 (-)
Type: TC
Location: 66524 - 67897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Dysosmobacter
Species
Dysosmobacter sp018228705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3004_12_55 | vegan > omnivore | 1.94649 | 0.04809 |