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Cluster: HRGMv2_3004_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3004_2 HRGMv2_3004_2_25 24869 26014 - 9.B.10.1.1
TC HRGMv2_3004_2 HRGMv2_3004_2_26 26112 27479 - 2.A.25.1.3
TF HRGMv2_3004_2 HRGMv2_3004_2_27 27602 28141 - SpoVT_AbrB
CAZyme HRGMv2_3004_2 HRGMv2_3004_2_28 28587 30509 + CBM48 | GH13_9
pfam HRGMv2_3004_2 HRGMv2_3004_2_29 30506 31714 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_3004_2 HRGMv2_3004_2_30 31711 32823 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_3004_2 HRGMv2_3004_2_31 33044 35125 + GT5
CAZyme HRGMv2_3004_2 HRGMv2_3004_2_32 35147 37576 + GT35
Gene ID: HRGMv2_3004_2_25
Type: TC
Location: 24869 - 26014 (-)
Gene ID: HRGMv2_3004_2_26
Type: TC
Location: 26112 - 27479 (-)
Gene ID: HRGMv2_3004_2_27
Type: TF
Location: 27602 - 28141 (-)
Gene ID: HRGMv2_3004_2_28
Type: CAZyme
Location: 28587 - 30509 (+)
Gene ID: HRGMv2_3004_2_29
Type: pfam
Location: 30506 - 31714 (+)
Gene ID: HRGMv2_3004_2_30
Type: pfam
Location: 31711 - 32823 (+)
Gene ID: HRGMv2_3004_2_31
Type: CAZyme
Location: 33044 - 35125 (+)
Gene ID: HRGMv2_3004_2_32
Type: CAZyme
Location: 35147 - 37576 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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