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Cluster: HRGMv2_2998_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2998_1 HRGMv2_2998_1_211 230162 231109 - GT2
pfam HRGMv2_2998_1 HRGMv2_2998_1_212 231314 231562 + ATPase_gene1
pfam HRGMv2_2998_1 HRGMv2_2998_1_213 231580 232011 + ATP-synt_I
TC HRGMv2_2998_1 HRGMv2_2998_1_214 232001 232765 + 3.A.2.1.5
TC HRGMv2_2998_1 HRGMv2_2998_1_215 232860 233126 + 3.A.2.1.2
pfam HRGMv2_2998_1 HRGMv2_2998_1_216 233166 233672 + ATP-synt_B
pfam HRGMv2_2998_1 HRGMv2_2998_1_217 233669 234205 + OSCP
TC HRGMv2_2998_1 HRGMv2_2998_1_218 234223 235743 + 3.A.2.1.5
TC HRGMv2_2998_1 HRGMv2_2998_1_219 235757 236608 + 3.A.2.1.5
TC HRGMv2_2998_1 HRGMv2_2998_1_220 236647 238050 + 3.A.2.1.5
pfam HRGMv2_2998_1 HRGMv2_2998_1_221 238047 238454 + ATP-synt_DE_N
NULL(UNKNOWN) HRGMv2_2998_1 HRGMv2_2998_1_222 238477 238662 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2998_1 HRGMv2_2998_1_223 238925 240373 - 2.A.38.1.1
STP HRGMv2_2998_1 HRGMv2_2998_1_224 240418 241776 - TrkA_C | TrkA_C
NULL(UNKNOWN) HRGMv2_2998_1 HRGMv2_2998_1_225 242040 243392 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2998_1 HRGMv2_2998_1_226 243430 244020 + 2.A.115.2.14
Gene ID: HRGMv2_2998_1_211
Type: CAZyme
Location: 230162 - 231109 (-)
Gene ID: HRGMv2_2998_1_212
Type: pfam
Location: 231314 - 231562 (+)
Gene ID: HRGMv2_2998_1_213
Type: pfam
Location: 231580 - 232011 (+)
Gene ID: HRGMv2_2998_1_214
Type: TC
Location: 232001 - 232765 (+)
Gene ID: HRGMv2_2998_1_215
Type: TC
Location: 232860 - 233126 (+)
Gene ID: HRGMv2_2998_1_216
Type: pfam
Location: 233166 - 233672 (+)
Gene ID: HRGMv2_2998_1_217
Type: pfam
Location: 233669 - 234205 (+)
Gene ID: HRGMv2_2998_1_218
Type: TC
Location: 234223 - 235743 (+)
Gene ID: HRGMv2_2998_1_219
Type: TC
Location: 235757 - 236608 (+)
Gene ID: HRGMv2_2998_1_220
Type: TC
Location: 236647 - 238050 (+)
Gene ID: HRGMv2_2998_1_221
Type: pfam
Location: 238047 - 238454 (+)
Gene ID: HRGMv2_2998_1_222
Type:
Location: 238477 - 238662 (+)
Gene ID: HRGMv2_2998_1_223
Type: TC
Location: 238925 - 240373 (-)
Gene ID: HRGMv2_2998_1_224
Type: STP
Location: 240418 - 241776 (-)
Gene ID: HRGMv2_2998_1_225
Type:
Location: 242040 - 243392 (+)
Gene ID: HRGMv2_2998_1_226
Type: TC
Location: 243430 - 244020 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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