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Cluster: HRGMv2_2998_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2998_10 HRGMv2_2998_10_47 49310 50809 + 3.A.1.2.3
TC HRGMv2_2998_10 HRGMv2_2998_10_48 50828 51892 + 3.A.1.2.3
TF HRGMv2_2998_10 HRGMv2_2998_10_49 51995 53599 + HTH_AraC | HTH_AraC
TC HRGMv2_2998_10 HRGMv2_2998_10_50 53634 55451 + 8.A.59.2.1
pfam HRGMv2_2998_10 HRGMv2_2998_10_51 55448 56368 + Peripla_BP_4
TC HRGMv2_2998_10 HRGMv2_2998_10_52 56325 57380 + 3.A.1.2.3
TC HRGMv2_2998_10 HRGMv2_2998_10_53 57537 58868 + 2.A.38.4.1
TC HRGMv2_2998_10 HRGMv2_2998_10_54 58884 59531 + 2.A.38.4.4
TC HRGMv2_2998_10 HRGMv2_2998_10_55 59668 61050 + 2.A.25.1.5
CAZyme HRGMv2_2998_10 HRGMv2_2998_10_56 61093 61812 - GH2
Gene ID: HRGMv2_2998_10_47
Type: TC
Location: 49310 - 50809 (+)
Gene ID: HRGMv2_2998_10_48
Type: TC
Location: 50828 - 51892 (+)
Gene ID: HRGMv2_2998_10_49
Type: TF
Location: 51995 - 53599 (+)
Gene ID: HRGMv2_2998_10_50
Type: TC
Location: 53634 - 55451 (+)
Gene ID: HRGMv2_2998_10_51
Type: pfam
Location: 55448 - 56368 (+)
Gene ID: HRGMv2_2998_10_52
Type: TC
Location: 56325 - 57380 (+)
Gene ID: HRGMv2_2998_10_53
Type: TC
Location: 57537 - 58868 (+)
Gene ID: HRGMv2_2998_10_54
Type: TC
Location: 58884 - 59531 (+)
Gene ID: HRGMv2_2998_10_55
Type: TC
Location: 59668 - 61050 (+)
Gene ID: HRGMv2_2998_10_56
Type: CAZyme
Location: 61093 - 61812 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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