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Cluster: HRGMv2_2998_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2998_1 HRGMv2_2998_1_10 7039 8748 - 8.A.7.1.1
STP HRGMv2_2998_1 HRGMv2_2998_1_11 8777 9040 - PTS-HPr
TC HRGMv2_2998_1 HRGMv2_2998_1_12 9111 11105 - 4.A.2.1.20
STP HRGMv2_2998_1 HRGMv2_2998_1_13 11233 12132 - PfkB
TF HRGMv2_2998_1 HRGMv2_2998_1_14 12129 12884 - HTH_DeoR
TC HRGMv2_2998_1 HRGMv2_2998_1_15 13143 14768 - 4.A.2.1.17
pfam HRGMv2_2998_1 HRGMv2_2998_1_16 14811 15959 - Patatin
TC HRGMv2_2998_1 HRGMv2_2998_1_17 16232 18253 + 3.A.10.1.13
NULL(UNKNOWN) HRGMv2_2998_1 HRGMv2_2998_1_18 18305 18781 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2998_1 HRGMv2_2998_1_19 18796 20079 - GT2
Gene ID: HRGMv2_2998_1_10
Type: TC
Location: 7039 - 8748 (-)
Gene ID: HRGMv2_2998_1_11
Type: STP
Location: 8777 - 9040 (-)
Gene ID: HRGMv2_2998_1_12
Type: TC
Location: 9111 - 11105 (-)
Gene ID: HRGMv2_2998_1_13
Type: STP
Location: 11233 - 12132 (-)
Gene ID: HRGMv2_2998_1_14
Type: TF
Location: 12129 - 12884 (-)
Gene ID: HRGMv2_2998_1_15
Type: TC
Location: 13143 - 14768 (-)
Gene ID: HRGMv2_2998_1_16
Type: pfam
Location: 14811 - 15959 (-)
Gene ID: HRGMv2_2998_1_17
Type: TC
Location: 16232 - 18253 (+)
Gene ID: HRGMv2_2998_1_18
Type:
Location: 18305 - 18781 (-)
Gene ID: HRGMv2_2998_1_19
Type: CAZyme
Location: 18796 - 20079 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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