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Cluster: HRGMv2_2996_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2996_1 HRGMv2_2996_1_230 235776 238091 + 1.C.105.2.8
TC HRGMv2_2996_1 HRGMv2_2996_1_231 238108 239493 + 2.A.66.1.28
TC HRGMv2_2996_1 HRGMv2_2996_1_232 239745 240806 + 3.A.1.2.3
TC HRGMv2_2996_1 HRGMv2_2996_1_233 240885 242417 + 3.A.1.2.3
TC HRGMv2_2996_1 HRGMv2_2996_1_234 242436 243521 + 3.A.1.2.3
pfam HRGMv2_2996_1 HRGMv2_2996_1_235 243550 243897 + Flg_new
TF HRGMv2_2996_1 HRGMv2_2996_1_236 243996 245591 + HTH_AraC
TC HRGMv2_2996_1 HRGMv2_2996_1_237 245588 247324 + 9.B.33.1.1
STP HRGMv2_2996_1 HRGMv2_2996_1_238 247321 248280 + Peripla_BP_1
TC HRGMv2_2996_1 HRGMv2_2996_1_239 248293 249282 + 8.A.5.1.6
pfam HRGMv2_2996_1 HRGMv2_2996_1_240 249412 249942 + Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10
STP HRGMv2_2996_1 HRGMv2_2996_1_241 249950 251323 + PIG-L
CAZyme HRGMv2_2996_1 HRGMv2_2996_1_242 251441 253714 + GH2
STP HRGMv2_2996_1 HRGMv2_2996_1_243 253743 254579 - PfkB
STP HRGMv2_2996_1 HRGMv2_2996_1_244 254576 255223 - HhH-GPD
TC HRGMv2_2996_1 HRGMv2_2996_1_245 255216 256283 - 9.A.23.1.1
Gene ID: HRGMv2_2996_1_230
Type: TC
Location: 235776 - 238091 (+)
Gene ID: HRGMv2_2996_1_231
Type: TC
Location: 238108 - 239493 (+)
Gene ID: HRGMv2_2996_1_232
Type: TC
Location: 239745 - 240806 (+)
Gene ID: HRGMv2_2996_1_233
Type: TC
Location: 240885 - 242417 (+)
Gene ID: HRGMv2_2996_1_234
Type: TC
Location: 242436 - 243521 (+)
Gene ID: HRGMv2_2996_1_235
Type: pfam
Location: 243550 - 243897 (+)
Gene ID: HRGMv2_2996_1_236
Type: TF
Location: 243996 - 245591 (+)
Gene ID: HRGMv2_2996_1_237
Type: TC
Location: 245588 - 247324 (+)
Gene ID: HRGMv2_2996_1_238
Type: STP
Location: 247321 - 248280 (+)
Gene ID: HRGMv2_2996_1_239
Type: TC
Location: 248293 - 249282 (+)
Gene ID: HRGMv2_2996_1_240
Type: pfam
Location: 249412 - 249942 (+)
Gene ID: HRGMv2_2996_1_241
Type: STP
Location: 249950 - 251323 (+)
Gene ID: HRGMv2_2996_1_242
Type: CAZyme
Location: 251441 - 253714 (+)
Gene ID: HRGMv2_2996_1_243
Type: STP
Location: 253743 - 254579 (-)
Gene ID: HRGMv2_2996_1_244
Type: STP
Location: 254576 - 255223 (-)
Gene ID: HRGMv2_2996_1_245
Type: TC
Location: 255216 - 256283 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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