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Cluster: HRGMv2_2996_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2996_3 HRGMv2_2996_3_10 10209 12827 + GH38
pfam HRGMv2_2996_3 HRGMv2_2996_3_11 12852 13886 + MPI_cupin_dom
CAZyme HRGMv2_2996_3 HRGMv2_2996_3_12 14032 15327 - GH29
TF HRGMv2_2996_3 HRGMv2_2996_3_13 15465 16262 + HTH_AraC
TC HRGMv2_2996_3 HRGMv2_2996_3_14 16604 17410 + 2.A.5.5.2
TC HRGMv2_2996_3 HRGMv2_2996_3_15 17455 18165 - 3.A.1.4.10
TC HRGMv2_2996_3 HRGMv2_2996_3_16 18177 18950 - 3.A.1.4.10
TC HRGMv2_2996_3 HRGMv2_2996_3_17 18950 20101 - 3.A.1.4.1
TC HRGMv2_2996_3 HRGMv2_2996_3_18 20101 20973 - 3.A.1.4.10
TC HRGMv2_2996_3 HRGMv2_2996_3_19 21117 22280 - 3.A.1.4.10
Gene ID: HRGMv2_2996_3_10
Type: CAZyme
Location: 10209 - 12827 (+)
Gene ID: HRGMv2_2996_3_11
Type: pfam
Location: 12852 - 13886 (+)
Gene ID: HRGMv2_2996_3_12
Type: CAZyme
Location: 14032 - 15327 (-)
Gene ID: HRGMv2_2996_3_13
Type: TF
Location: 15465 - 16262 (+)
Gene ID: HRGMv2_2996_3_14
Type: TC
Location: 16604 - 17410 (+)
Gene ID: HRGMv2_2996_3_15
Type: TC
Location: 17455 - 18165 (-)
Gene ID: HRGMv2_2996_3_16
Type: TC
Location: 18177 - 18950 (-)
Gene ID: HRGMv2_2996_3_17
Type: TC
Location: 18950 - 20101 (-)
Gene ID: HRGMv2_2996_3_18
Type: TC
Location: 20101 - 20973 (-)
Gene ID: HRGMv2_2996_3_19
Type: TC
Location: 21117 - 22280 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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