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Cluster: HRGMv2_2993_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2993_3 HRGMv2_2993_3_126 135059 136915 - 3.A.1.135.5
TC HRGMv2_2993_3 HRGMv2_2993_3_127 136908 138650 - 3.A.1.135.5
TF HRGMv2_2993_3 HRGMv2_2993_3_128 138647 139093 - MarR
CAZyme HRGMv2_2993_3 HRGMv2_2993_3_129 139366 140643 - GH18
TC HRGMv2_2993_3 HRGMv2_2993_3_130 140740 141987 - 3.A.1.1.22
pfam HRGMv2_2993_3 HRGMv2_2993_3_131 141988 143109 - MacB_PCD
pfam HRGMv2_2993_3 HRGMv2_2993_3_132 143106 145139 - HlyD_3
TC HRGMv2_2993_3 HRGMv2_2993_3_133 145168 146052 - 3.A.1.1.12
TC HRGMv2_2993_3 HRGMv2_2993_3_134 146049 146987 - 3.A.1.1.34
pfam HRGMv2_2993_3 HRGMv2_2993_3_135 146974 149454 - SBP_bac_8
STP HRGMv2_2993_3 HRGMv2_2993_3_136 149802 150686 - PfkB
TC HRGMv2_2993_3 HRGMv2_2993_3_137 150763 152874 - 3.A.10.1.13
TC HRGMv2_2993_3 HRGMv2_2993_3_138 152928 153656 - 9.B.20.1.4
Gene ID: HRGMv2_2993_3_126
Type: TC
Location: 135059 - 136915 (-)
Gene ID: HRGMv2_2993_3_127
Type: TC
Location: 136908 - 138650 (-)
Gene ID: HRGMv2_2993_3_128
Type: TF
Location: 138647 - 139093 (-)
Gene ID: HRGMv2_2993_3_129
Type: CAZyme
Location: 139366 - 140643 (-)
Gene ID: HRGMv2_2993_3_130
Type: TC
Location: 140740 - 141987 (-)
Gene ID: HRGMv2_2993_3_131
Type: pfam
Location: 141988 - 143109 (-)
Gene ID: HRGMv2_2993_3_132
Type: pfam
Location: 143106 - 145139 (-)
Gene ID: HRGMv2_2993_3_133
Type: TC
Location: 145168 - 146052 (-)
Gene ID: HRGMv2_2993_3_134
Type: TC
Location: 146049 - 146987 (-)
Gene ID: HRGMv2_2993_3_135
Type: pfam
Location: 146974 - 149454 (-)
Gene ID: HRGMv2_2993_3_136
Type: STP
Location: 149802 - 150686 (-)
Gene ID: HRGMv2_2993_3_137
Type: TC
Location: 150763 - 152874 (-)
Gene ID: HRGMv2_2993_3_138
Type: TC
Location: 152928 - 153656 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2993_3_133 vegetarian > vegan 1.98450 0.00455

🧭 Explore Read Mapping of CGC

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