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Cluster: HRGMv2_2993_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2993_2 HRGMv2_2993_2_97 103381 106062 - GH38
TF HRGMv2_2993_2 HRGMv2_2993_2_98 106087 107067 - HTH_AraC | HTH_AraC
TC HRGMv2_2993_2 HRGMv2_2993_2_99 107071 108042 - 3.A.1.5.12
TC HRGMv2_2993_2 HRGMv2_2993_2_100 108047 109093 - 3.A.1.5.29
TC HRGMv2_2993_2 HRGMv2_2993_2_101 109107 110228 - 3.A.1.5.12
TC HRGMv2_2993_2 HRGMv2_2993_2_102 110255 111253 - 3.A.1.5.29
TC HRGMv2_2993_2 HRGMv2_2993_2_103 111385 113475 - 3.A.1.5.29
NULL(UNKNOWN) HRGMv2_2993_2 HRGMv2_2993_2_104 113856 114533 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2993_2 HRGMv2_2993_2_105 114716 117364 + GH116
Gene ID: HRGMv2_2993_2_97
Type: CAZyme
Location: 103381 - 106062 (-)
Gene ID: HRGMv2_2993_2_98
Type: TF
Location: 106087 - 107067 (-)
Gene ID: HRGMv2_2993_2_99
Type: TC
Location: 107071 - 108042 (-)
Gene ID: HRGMv2_2993_2_100
Type: TC
Location: 108047 - 109093 (-)
Gene ID: HRGMv2_2993_2_101
Type: TC
Location: 109107 - 110228 (-)
Gene ID: HRGMv2_2993_2_102
Type: TC
Location: 110255 - 111253 (-)
Gene ID: HRGMv2_2993_2_103
Type: TC
Location: 111385 - 113475 (-)
Gene ID: HRGMv2_2993_2_104
Type:
Location: 113856 - 114533 (-)
Gene ID: HRGMv2_2993_2_105
Type: CAZyme
Location: 114716 - 117364 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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