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Cluster: HRGMv2_2993_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2993_24 HRGMv2_2993_24_8 8470 9447 + 3.A.1.1.10
TC HRGMv2_2993_24 HRGMv2_2993_24_9 9464 10390 + 3.A.1.1.29
STP HRGMv2_2993_24 HRGMv2_2993_24_10 10507 12165 + SBP_bac_1
CAZyme HRGMv2_2993_24 HRGMv2_2993_24_11 12266 13756 + GH32
TC HRGMv2_2993_24 HRGMv2_2993_24_12 13910 14833 - 2.A.115.1.1
pfam HRGMv2_2993_24 HRGMv2_2993_24_13 14930 16168 - PFK
pfam HRGMv2_2993_24 HRGMv2_2993_24_14 16445 17416 + F_bP_aldolase
TC HRGMv2_2993_24 HRGMv2_2993_24_15 17507 18760 + 2.A.49.9.2
Gene ID: HRGMv2_2993_24_8
Type: TC
Location: 8470 - 9447 (+)
Gene ID: HRGMv2_2993_24_9
Type: TC
Location: 9464 - 10390 (+)
Gene ID: HRGMv2_2993_24_10
Type: STP
Location: 10507 - 12165 (+)
Gene ID: HRGMv2_2993_24_11
Type: CAZyme
Location: 12266 - 13756 (+)
Gene ID: HRGMv2_2993_24_12
Type: TC
Location: 13910 - 14833 (-)
Gene ID: HRGMv2_2993_24_13
Type: pfam
Location: 14930 - 16168 (-)
Gene ID: HRGMv2_2993_24_14
Type: pfam
Location: 16445 - 17416 (+)
Gene ID: HRGMv2_2993_24_15
Type: TC
Location: 17507 - 18760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2993_24_9 vegan > omnivore 1.73941 0.00863

🧭 Explore Read Mapping of CGC

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