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Cluster: HRGMv2_2993_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2993_11 HRGMv2_2993_11_26 30620 31264 + 9.B.28.1.2
TF HRGMv2_2993_11 HRGMv2_2993_11_27 31393 33612 - HTH_AraC
pfam HRGMv2_2993_11 HRGMv2_2993_11_28 33956 34837 - AP_endonuc_2
CAZyme HRGMv2_2993_11 HRGMv2_2993_11_29 34852 35838 - GH179
CAZyme HRGMv2_2993_11 HRGMv2_2993_11_30 35911 36933 - GH179
pfam HRGMv2_2993_11 HRGMv2_2993_11_31 37197 37970 + Amidohydro_2
pfam HRGMv2_2993_11 HRGMv2_2993_11_32 38048 38818 + Amidohydro_2
TC HRGMv2_2993_11 HRGMv2_2993_11_33 39110 40924 + 3.A.16.1.1
Gene ID: HRGMv2_2993_11_26
Type: TC
Location: 30620 - 31264 (+)
Gene ID: HRGMv2_2993_11_27
Type: TF
Location: 31393 - 33612 (-)
Gene ID: HRGMv2_2993_11_28
Type: pfam
Location: 33956 - 34837 (-)
Gene ID: HRGMv2_2993_11_29
Type: CAZyme
Location: 34852 - 35838 (-)
Gene ID: HRGMv2_2993_11_30
Type: CAZyme
Location: 35911 - 36933 (-)
Gene ID: HRGMv2_2993_11_31
Type: pfam
Location: 37197 - 37970 (+)
Gene ID: HRGMv2_2993_11_32
Type: pfam
Location: 38048 - 38818 (+)
Gene ID: HRGMv2_2993_11_33
Type: TC
Location: 39110 - 40924 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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