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Cluster: HRGMv2_2993_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2993_8 HRGMv2_2993_8_21 27241 29259 + 3.A.3.6.10
CAZyme HRGMv2_2993_8 HRGMv2_2993_8_22 29319 31565 - GH3
CAZyme HRGMv2_2993_8 HRGMv2_2993_8_23 31630 34788 - GH38
CAZyme HRGMv2_2993_8 HRGMv2_2993_8_24 34895 35881 - GH130_2
STP HRGMv2_2993_8 HRGMv2_2993_8_25 36162 37679 - SBP_bac_1
TC HRGMv2_2993_8 HRGMv2_2993_8_26 37761 38705 - 3.A.1.1.29
TC HRGMv2_2993_8 HRGMv2_2993_8_27 38718 39710 - 3.A.1.1.10
CAZyme HRGMv2_2993_8 HRGMv2_2993_8_28 40062 41927 + GH20
Gene ID: HRGMv2_2993_8_21
Type: TC
Location: 27241 - 29259 (+)
Gene ID: HRGMv2_2993_8_22
Type: CAZyme
Location: 29319 - 31565 (-)
Gene ID: HRGMv2_2993_8_23
Type: CAZyme
Location: 31630 - 34788 (-)
Gene ID: HRGMv2_2993_8_24
Type: CAZyme
Location: 34895 - 35881 (-)
Gene ID: HRGMv2_2993_8_25
Type: STP
Location: 36162 - 37679 (-)
Gene ID: HRGMv2_2993_8_26
Type: TC
Location: 37761 - 38705 (-)
Gene ID: HRGMv2_2993_8_27
Type: TC
Location: 38718 - 39710 (-)
Gene ID: HRGMv2_2993_8_28
Type: CAZyme
Location: 40062 - 41927 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2993_8_24 vegan > omnivore 1.44204 0.03441

🧭 Explore Read Mapping of CGC

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