Cluster: HRGMv2_2993_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2993
- CGC Family ID: CGCFAM_01337
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2993_6 | HRGMv2_2993_6_6 | 12451 | 13332 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | HRGMv2_2993_6 | HRGMv2_2993_6_7 | 13322 | 13984 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2993_6 | HRGMv2_2993_6_8 | 14001 | 14714 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2993_6 | HRGMv2_2993_6_9 | 14785 | 16038 | - | GT2 |
| pfam | HRGMv2_2993_6 | HRGMv2_2993_6_10 | 16035 | 16739 | - | VTT_dom |
| TC | HRGMv2_2993_6 | HRGMv2_2993_6_11 | 16975 | 17631 | + | 9.B.149.1.11 |
Gene ID: HRGMv2_2993_6_6
Type: TC
Location: 12451 - 13332 (+)
Type: TC
Location: 12451 - 13332 (+)
Gene ID: HRGMv2_2993_6_7
Type:
Location: 13322 - 13984 (+)
Type:
Location: 13322 - 13984 (+)
Gene ID: HRGMv2_2993_6_8
Type:
Location: 14001 - 14714 (+)
Type:
Location: 14001 - 14714 (+)
Gene ID: HRGMv2_2993_6_9
Type: CAZyme
Location: 14785 - 16038 (-)
Type: CAZyme
Location: 14785 - 16038 (-)
Gene ID: HRGMv2_2993_6_10
Type: pfam
Location: 16035 - 16739 (-)
Type: pfam
Location: 16035 - 16739 (-)
Gene ID: HRGMv2_2993_6_11
Type: TC
Location: 16975 - 17631 (+)
Type: TC
Location: 16975 - 17631 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pelethomonas
Species
Pelethomonas sp958423465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.